View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21444_high_5 (Length: 398)
Name: NF21444_high_5
Description: NF21444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21444_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 166 - 398
Target Start/End: Complemental strand, 28139856 - 28139613
Alignment:
| Q |
166 |
gaaaggagttgatcaattatcatgacatcttcataaaagtcaatgaatacattta---------taaaataaaagtcaatgaatagtatattctg--tta |
254 |
Q |
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| T |
28139856 |
gaaaggagttgatcaattatcatgacatcttcataaaagtcaatgaatacatttaaaaaataaataaaataaaagtcaatgaatagtatattctgaatta |
28139757 |
T |
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| Q |
255 |
atttcacttaataagaacctgtataaatcagtttattttgaagaatagagttttatttaaaaattactattannnnnnnnaagggaaaaattattatttt |
354 |
Q |
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| T |
28139756 |
atttcacttaataagaacttgtataaatcagtttattttgaagaatagagttttatttaaaaattactattattttttttaagggaaaaattaatatttt |
28139657 |
T |
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| Q |
355 |
gttagtcatgttttctctaacaaatatatgtccgaaacaattga |
398 |
Q |
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| T |
28139656 |
gttagtcatgttttctctaacaaatatatgtccaaaacaattga |
28139613 |
T |
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