View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21444_high_8 (Length: 381)

Name: NF21444_high_8
Description: NF21444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21444_high_8
NF21444_high_8
[»] chr5 (2 HSPs)
chr5 (23-360)||(20648763-20649100)
chr5 (23-360)||(20632667-20633001)


Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 23 - 360
Target Start/End: Original strand, 20648763 - 20649100
Alignment:
Q  23 gacatcatcaggagcagtatactcgggaacatgatcagtatacaaaacttcaatgctcttattgaagcgtttaataccatatctcataaagatgtaacca 122  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||  |||||| |||||||| |||||||  ||| |  |  |||||||||||||    
T  20648763 gacatcatcaggagcagtatactccggaacatgatcagtatacaaaactttcatgctcctattgaagggtttaatttcatctaccccaaagatgtaacca 20648862  T
Q  123 tcatcgatatcccaattgcgaaacataccagtatcaaatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcat 222  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20648863 tcatcgatatcccaattgcgaaacataccagtatcatatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcat 20648962  T
Q  223 tataaatgtaaacaacatttgcatcctggccaactaaagcaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaatacc 322  Q
    |||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20648963 tataaatgtaaacaacttttgtatcgtggccaactaaaggaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaatacc 20649062  T
Q  323 attcacaaatgcatatgcatcagaatcatttgatgatg 360  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20649063 attcacaaatgcatatgcatcagaatcatttgatgatg 20649100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 23 - 360
Target Start/End: Original strand, 20632667 - 20633001
Alignment:
Q  23 gacatcatcaggagcagtatactcgggaacatgatcagtatacaaaacttcaatgctcttattgaagcgtttaataccatatctcataaagatgtaacca 122  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||| |||||| | |||||| |  |||||||||||||    
T  20632667 gacatcatcaggagcagtatactccggaacatgatcagtatacaaaactttcatgctcttattgaagtgtttaaaatcatatcccccaaagatgtaacca 20632766  T
Q  123 tcatcgatatcccaattgcgaaacataccagtatcaaatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcat 222  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20632767 tcatcgatatcccaattgcgaaacataccagtatcatatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcat 20632866  T
Q  223 tataaatgtaaacaacatttgcatcctggccaactaaagcaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaatacc 322  Q
    |||||||||||||||   ||| ||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20632867 tataaatgtaaacaa---ttgtatcgtggccagcgaaaggaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaatacc 20632963  T
Q  323 attcacaaatgcatatgcatcagaatcatttgatgatg 360  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20632964 attcacaaatgcatatgcatcagaatcatttgatgatg 20633001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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