View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21444_low_1 (Length: 543)
Name: NF21444_low_1
Description: NF21444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21444_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 25 - 487
Target Start/End: Original strand, 54472082 - 54472556
Alignment:
| Q |
25 |
gacgtcacatcatcatcataaatcatcaccctcgaacaacggcaacaatacaaatgataacaatgggaatcaattgagcgtgggtggtataatagcagtt |
124 |
Q |
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| T |
54472082 |
gacgtcacatcatcatcataaatcatcaccctcgaacaacggcaacaatacaaatgataacaatgggaatcaattgagcgtgggtggtataatagcagtt |
54472181 |
T |
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| Q |
125 |
gcaggtgcagcttgtataatcctccttgtcattatcctactctgcgttatatgtacaagaaggaagaagagatcacaacctcatcacattcattactacc |
224 |
Q |
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| T |
54472182 |
gcaggtgcagcttgtataatcctccttgtcattatcctactctgcgttatatgtacaagaaggaagaagagatcacaacctcatcacattcattactacc |
54472281 |
T |
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| Q |
225 |
ctactccagcacacggtatatatttttatatatctcctatttcnnnnnnnaataggaatttgcaaataagcatgttatgaagtttagaatagttaatgga |
324 |
Q |
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| T |
54472282 |
ctactccagcacacggtatatatttttatatatctcctatttctttttttaataggaatttgcaaataagcatgttatgaagtttagaatagttaatggg |
54472381 |
T |
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| Q |
325 |
ggaag------------ttaattaattaatgattcatagcctattcttannnnnnngatcagaaatggatcctctaaagcttttgcatggtgccatagtc |
412 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472382 |
ggaagctaattaattaattaattaattaatgattcatagcctattcttatttttttgatcagaaatggatcctctaaagcttttgcatggtgccatagtc |
54472481 |
T |
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| Q |
413 |
gacgcggtagaggatccaaatttgaatcttatgtagctacaatatggtgttgcaaatgtagaaaccgttagatat |
487 |
Q |
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| T |
54472482 |
gacgcggtagaggatccaaatttgaatcttatgtagctacaatatggtgttgcaaatgtagaaactgtaagatat |
54472556 |
T |
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