View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21445_high_1_N (Length: 731)

Name: NF21445_high_1_N
Description: NF21445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21445_high_1_N
NF21445_high_1_N
[»] chr8 (5 HSPs)
chr8 (200-476)||(4366050-4366326)
chr8 (545-706)||(4365890-4366051)
chr8 (22-196)||(4366305-4366484)
chr8 (125-183)||(27924489-27924547)
chr8 (129-175)||(37940455-37940501)
[»] chr4 (3 HSPs)
chr4 (121-196)||(47742777-47742852)
chr4 (121-195)||(26194542-26194616)
chr4 (126-179)||(21139319-21139372)
[»] chr2 (4 HSPs)
chr2 (126-197)||(33635700-33635771)
chr2 (121-195)||(8329654-8329728)
chr2 (121-196)||(45716483-45716558)
chr2 (121-196)||(36101005-36101076)
[»] chr3 (4 HSPs)
chr3 (121-196)||(50662464-50662539)
chr3 (125-196)||(40892801-40892872)
chr3 (121-183)||(9099174-9099236)
chr3 (121-183)||(23086445-23086507)
[»] chr1 (1 HSPs)
chr1 (121-196)||(963957-964032)
[»] scaffold0009 (1 HSPs)
scaffold0009 (121-183)||(140308-140370)
[»] chr5 (3 HSPs)
chr5 (121-183)||(14148319-14148381)
chr5 (121-183)||(26440087-26440149)
chr5 (121-183)||(36301223-36301285)
[»] chr7 (1 HSPs)
chr7 (121-196)||(45879116-45879191)


Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 200 - 476
Target Start/End: Complemental strand, 4366326 - 4366050
Alignment:
Q  200 aagttaaaagtgtgttcttttcggtgaagagggagagagaatcaaccccaaacccactccttgtccatcaattgagaagaatcaaaattcaaacccctta 299  Q
    ||||||||||| |||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  4366326 aagttaaaagtatgttcttttccgcgaaaagggagagagaatcaaccccaaaccctctccttgtccatcaatagagaagaatcaaaattcaaacccctta 4366227  T
Q  300 attctccctatgtgggcagcaacttagaaggagaagaagtaattagagatgaagagaagtcacgagaatggaagcttggaattgtagagatcaaagtcaa 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4366226 attctccctatgtgggcagcaacttagaaggagaagaagtaattagagatgaagagaagtcacgagaatggaagcttggaattgtagagatcaaagtcaa 4366127  T
Q  400 tttggaaatttcatcaatctcttcttaagagagcctaaggtaacatagaatcccttccctaaaacatctatagggtg 476  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4366126 tttggaaatttcatcaatctcttcttaagagagcctaaggtaacatagaatcccttccttaaaacatctatagggtg 4366050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 545 - 706
Target Start/End: Complemental strand, 4366051 - 4365890
Alignment:
Q  545 tgattgaatgtttgttgttgtgagctgatttttattgcatacaaaatgataattagtttgcatgttgtttttaattgagtttgatgggtatgagttagtt 644  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4366051 tgattgaatgtttgttgttatgagatgatttttgttgcatacaaaatgataattagtttgcatgttgtttttaattgagtttgatgggtatgagttagtt 4365952  T
Q  645 tataactgaaataaatcattacggagatgaacttgaagtttggttccggatatgaactttgt 706  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4365951 tataactgaaataaatcattacggatatgaacttgaagtttggttccggatatgaactttgt 4365890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 22 - 196
Target Start/End: Complemental strand, 4366484 - 4366305
Alignment:
Q  22 atcatcacattgatagtggaatcttttgtctttaaatatatggttatattaacaattgtttttaagtttggagaaaaattaacaaatgccttcaaggta- 120  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||  |||  | ||     
T  4366484 atcatcacattgatagtggaatcttttctctttaaatatatagttatattaacaattgtttttaagtttagagaaaaattaacaagtgttttcgggatac 4366385  T
Q  121 ----taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttcttttc 196  Q
        |||||||| ||||||| ||||||||| ||| || | ||||||||||||||||||||||||||||| ||||||||||    
T  4366384 ttgttaaggaatcataaaatgaaatattattttgaaaattatgtattctactttttaaaagttaaaagtatgttcttttc 4366305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 27924489 - 27924547
Alignment:
Q  125 gaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaa 183  Q
    |||||| |||| |||||||||||||| || | |||||||||||||||| ||||||||||    
T  27924489 gaattagaaaagaaaatattatcttgaaaattatgtattctactttttgaaagttaaaa 27924547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 37940455 - 37940501
Alignment:
Q  129 tataaaataaaatattatcttggaagtcatgtattctactttttaaa 175  Q
    ||||||| ||||||||||||||||| |  ||||||||||||||||||    
T  37940455 tataaaagaaaatattatcttggaaattgtgtattctactttttaaa 37940501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 47742852 - 47742777
Alignment:
Q  121 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttcttttc 196  Q
    |||||||||||||||  |||||||||||||||| |  |||||| ||| |||||||||||||||  |||||||||||    
T  47742852 taaggaattataaaaggaaatattatcttggaatttgtgtattatacattttaaaagttaaaaaagtgttcttttc 47742777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 26194542 - 26194616
Alignment:
Q  121 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttctttt 195  Q
    |||||||||||||||| ||||||||||||| || |  ||||||| ||||||||||| || |||  ||||||||||    
T  26194542 taaggaattataaaatgaaatattatcttgtaaattgtgtattcaactttttaaaaattgaaaaagtgttctttt 26194616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 21139372 - 21139319
Alignment:
Q  126 aattataaaataaaatattatcttggaagtcatgtattctactttttaaaagtt 179  Q
    |||||||||| |||| ||||||||| || | |||||||||||||||| ||||||    
T  21139372 aattataaaagaaaacattatcttgaaaattatgtattctactttttgaaagtt 21139319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 33635700 - 33635771
Alignment:
Q  126 aattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttcttttcg 197  Q
    |||||||||| |||||||| |||||||| |  ||||||||||||||||||||||||||  || |||||||||    
T  33635700 aattataaaagaaaatattgtcttggaaattgtgtattctactttttaaaagttaaaaaagtattcttttcg 33635771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 8329654 - 8329728
Alignment:
Q  121 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttctttt 195  Q
    |||||||||||| ||  ||||||||| |||||| | |||||||||||||||| ||||||||||  ||||||||||    
T  8329654 taaggaattatataaggaaatattattttggaaattatgtattctactttttgaaagttaaaatggtgttctttt 8329728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 45716558 - 45716483
Alignment:
Q  121 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttcttttc 196  Q
    |||||||||||||||  ||||||| |||||||| | ||| |||||||||||| ||||||||||  ||||| |||||    
T  45716558 taaggaattataaaaggaaatattgtcttggaaattatggattctactttttgaaagttaaaaaagtgttattttc 45716483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 36101005 - 36101076
Alignment:
Q  121 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttcttttc 196  Q
    |||| ||||||||||  ||||||| ||||||||    ||||||||||||||| |||||||||| | ||||||||||    
T  36101005 taagaaattataaaaggaaatattgtcttggaa----tgtattctactttttgaaagttaaaaatatgttcttttc 36101076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 50662539 - 50662464
Alignment:
Q  121 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttcttttc 196  Q
    |||||||||||||||||||||||||| |||||| |  | ||||||||||||| ||||| ||||   ||||||||||    
T  50662539 taaggaattataaaataaaatattatattggaaattttctattctactttttgaaagtcaaaaaaatgttcttttc 50662464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 40892801 - 40892872
Alignment:
Q  125 gaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttcttttc 196  Q
    |||||||||||  ||||||| |||||||| |  ||||||||||||||| |||||||| |  |||||||||||    
T  40892801 gaattataaaaggaaatattttcttggaaattgtgtattctactttttgaaagttaataaagtgttcttttc 40892872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 9099236 - 9099174
Alignment:
Q  121 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaa 183  Q
    |||||||||||||||  ||||||| | |||||| || ||||||| ||||||| ||||||||||    
T  9099236 taaggaattataaaaggaaatattgtattggaaatcgtgtattcaactttttgaaagttaaaa 9099174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 23086445 - 23086507
Alignment:
Q  121 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaa 183  Q
    ||||||||||||||| |||||||| | || ||| |  |||||| |||||||||||||||||||    
T  23086445 taaggaattataaaaaaaaatattgttttagaaattgtgtattatactttttaaaagttaaaa 23086507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 963957 - 964032
Alignment:
Q  121 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttcttttc 196  Q
    ||||||||||||| |  ||||||| |||||||| |  ||||||||||||||| ||||||||||  |||||||||||    
T  963957 taaggaattataataggaaatattgtcttggaaattgtgtattctactttttcaaagttaaaaaagtgttcttttc 964032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 140370 - 140308
Alignment:
Q  121 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaa 183  Q
    |||||||||||||||| |||| |||||||| || | |||||||||| ||||| ||||||||||    
T  140370 taaggaattataaaatgaaattttatcttgaaaattatgtattctattttttgaaagttaaaa 140308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 14148381 - 14148319
Alignment:
Q  121 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaa 183  Q
    |||||||||||||||  | |||||||||||||| |  ||||||||||||||| ||||||||||    
T  14148381 taaggaattataaaaagacatattatcttggaaattgtgtattctactttttgaaagttaaaa 14148319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 26440087 - 26440149
Alignment:
Q  121 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaa 183  Q
    |||||||||||||||| ||||||  | || ||| |  ||||||||||||||||||||||||||    
T  26440087 taaggaattataaaatgaaatatctttttagaaattgtgtattctactttttaaaagttaaaa 26440149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 36301223 - 36301285
Alignment:
Q  121 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaa 183  Q
    ||||||||||||||| |||||||||| || ||| |  |||||| ||| |||||||||||||||    
T  36301223 taaggaattataaaagaaaatattattttagaaattgtgtattttacattttaaaagttaaaa 36301285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 45879116 - 45879191
Alignment:
Q  121 taaggaattataaaataaaatattatcttggaagtcatgtattctactttttaaaagttaaaagtgtgttcttttc 196  Q
    |||||||||||||||  |||| || |||||||| |  ||||||||||||||| |||| ||||| |||||| |||||    
T  45879116 taaggaattataaaaggaaattttgtcttggaaattgtgtattctactttttgaaaggtaaaaatgtgtttttttc 45879191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University