View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21445_high_3_N (Length: 331)
Name: NF21445_high_3_N
Description: NF21445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21445_high_3_N |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 3 - 291
Target Start/End: Complemental strand, 29523794 - 29523506
Alignment:
| Q |
3 |
ttcagttgaggggatatccagatgtataatttcaattttactacttccctgtaaacacatgtagacaaataaatttcagggaaaatagtcaatgtaaagt |
102 |
Q |
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| T |
29523794 |
ttcagttgaggggatatccagatgtataatttcaattttactacttccctgtaaacacatgtagacacataaatttctgggaaaatagtcaatgtgaagt |
29523695 |
T |
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| Q |
103 |
cagtttagtggtaaaagtttgtatttgtaacctaaagagataattttgaaaatctcatacaggaagttataaaatagtcgttaagacataaattattctg |
202 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| || |
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| T |
29523694 |
cagtttagtggtaagagtttgtatttgtaacctaaagagataattttgaaaatctcatacaggaaattataaaatagtcgtta--acataaattattttg |
29523597 |
T |
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| Q |
203 |
atgttagcatagaataagattaccgtattttcctttaagacatgaattatatcttcaggcaacc--agtctactacatttcacaggttctg |
291 |
Q |
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||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||| |
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| T |
29523596 |
atgttagtatacagtaagattaccgtattttcctttaagacatgaattatatcttcaggcaaccatagtctactacatttcccaggctctg |
29523506 |
T |
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