View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21445_high_5_N (Length: 322)

Name: NF21445_high_5_N
Description: NF21445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21445_high_5_N
NF21445_high_5_N
[»] chr3 (2 HSPs)
chr3 (2-315)||(7903215-7903528)
chr3 (58-139)||(35740232-35740312)
[»] chr7 (2 HSPs)
chr7 (2-145)||(16994393-16994535)
chr7 (12-127)||(28002574-28002688)
[»] chr1 (2 HSPs)
chr1 (57-139)||(52148737-52148819)
chr1 (40-191)||(48563123-48563273)
[»] chr4 (2 HSPs)
chr4 (14-139)||(35260242-35260366)
chr4 (11-114)||(38011662-38011765)
[»] chr8 (1 HSPs)
chr8 (12-139)||(41566102-41566228)
[»] chr2 (1 HSPs)
chr2 (12-100)||(39228857-39228945)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 2 - 315
Target Start/End: Complemental strand, 7903528 - 7903215
Alignment:
Q  2 caaatatatacgtaagaactcaaatcgaggaatgaccacaataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaaa 101  Q
    |||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||  |||||||||||||||||    
T  7903528 caaacatatgcgtaagaactcaaatcgaggaatgaccccaatacgttagtaatcaaaccctttcgggttaacagaaccatatcttttcaagtttttgaaa 7903429  T
Q  102 ccaaaccacatcataaagaggccaaaagtcttcaaccatccaatgttatatcacaaacatcaggaagataaacgaaaaacatactagacgcgggtgacaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||    
T  7903428 ccaaaccacatcataaagaggccaaaagtcttcaaccatccaatgttatatcacgaacattaggaacataaacgaaaaacatactagacgcgggtgacaa 7903329  T
Q  202 acatccggttacagacaaacaccaccaatgacccaaacaaacacaaaccaccaacctcggcagcggctccacctaccaaccaattcttcgaagcgaacta 301  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||| | ||||||||    
T  7903328 acatccggttacagacaaacaccgccaatgacccaaacaaacacaaaccactagcctcggcagcggctccacctactaaccaattcttccacgcgaacta 7903229  T
Q  302 gaaccaacaccaaa 315  Q
    ||||||||||||||    
T  7903228 gaaccaacaccaaa 7903215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 35740232 - 35740312
Alignment:
Q  58 acccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccacatcataaagaggccaaaagtcttcaacca 139  Q
    ||||||| ||| |||||||||||| |  ||||  ||||||||||||||| ||||||| ||  ||||| ||||||||||||||    
T  35740232 accctttcgggctaacagaaccattccctttcgggtttttgaaaccaaatcacatcaaaacaaggcc-aaagtcttcaacca 35740312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 145
Target Start/End: Complemental strand, 16994535 - 16994393
Alignment:
Q  2 caaatatatacgtaagaactcaaatcgaggaatgaccacaataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaaa 101  Q
    |||| ||| ||||||||||||| ||| ||| | ||   ||||||  ||||||||| ||||||| ||||||||| || |||||  ||||||||||| ||||    
T  16994535 caaacatacacgtaagaactcagatcaagggacgagtccaataaactagtaatcagaccctttcgggttaacaaaatcataccctttcaagttttagaaa 16994436  T
Q  102 ccaaaccacatcataaagaggccaaaagtcttcaaccatccaat 145  Q
    || | |||||||| |||||||||||||||||||||||| |||||    
T  16994435 ccta-ccacatcaaaaagaggccaaaagtcttcaaccacccaat 16994393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 28002688 - 28002574
Alignment:
Q  12 cgtaagaactcaaatcgaggaatgaccacaataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccaca 111  Q
    |||||||||||| ||||||| ||||   ||||| |||| ||| || |||||||  | ||| ||||  |||||  ||||| |||||||||||||| |||||    
T  28002688 cgtaagaactcagatcgagggatgagttcaatacgttaataaccagaccctttcagattagcagagtcataccctttcaggtttttgaaaccaatccaca 28002589  T
Q  112 tcataaagaggccaaa 127  Q
    ||| ||||||||||||    
T  28002588 tca-aaagaggccaaa 28002574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 52148819 - 52148737
Alignment:
Q  57 aacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccacatcataaagaggccaaaagtcttcaacca 139  Q
    |||||||| ||||||||| ||||||||  ||| | |||||||||| |||||||||||| ||||||||||||||||||||||||    
T  52148819 aaccctttcgggttaacataaccatacccttttaggtttttgaaatcaaaccacatcaaaaagaggccaaaagtcttcaacca 52148737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 191
Target Start/End: Complemental strand, 48563273 - 48563123
Alignment:
Q  40 caataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccacatcataaagaggccaaaagtcttcaacca 139  Q
    ||||| |||||||| || |||||||  |||||| ||||||||||  ||||| |||| | |||||||||||||||| ||  ||||||||||||||| ||||    
T  48563273 caatatgttagtaaccagaccctttcaggttaatagaaccataccctttcaggtttataaaaccaaaccacatca-aactaggccaaaagtcttcgacca 48563175  T
Q  140 tccaatgttatatcacaaacatcaggaagataaacgaaaaacatactagacg 191  Q
     ||| | |   |||||||||| || ||| | ||| ||||||||||| |||||    
T  48563174 cccagtctctgatcacaaacaacacgaacaaaaaggaaaaacataccagacg 48563123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 35260242 - 35260366
Alignment:
Q  14 taagaactcaaatcgaggaatgaccacaataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccacatc 113  Q
    |||||||||||||||| | ||||   ||||| ||||||| |||||||||||  |||||||||||||||||   ||| || ||| ||||||||||||||||    
T  35260242 taagaactcaaatcgatggatgaatccaatatgttagtattcaaaccctttcaggttaacagaaccataccccttc-aggtttagaaaccaaaccacatc 35260340  T
Q  114 ataaagaggccaaaagtcttcaacca 139  Q
    | || |||||||||| ||||||||||    
T  35260341 aaaacgaggccaaaattcttcaacca 35260366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 38011662 - 38011765
Alignment:
Q  11 acgtaagaactcaaatcgaggaatgaccacaataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccac 110  Q
    ||||||||| ||| ||||||| ||||   ||||| |||||||| || ||||||  |||||| |||||||||||  || | |||||| |||||||||||||    
T  38011662 acgtaagaattcagatcgagggatgagtccaatacgttagtaaccagacccttgcgggttatcagaaccatacccttacgagttttagaaaccaaaccac 38011761  T
Q  111 atca 114  Q
    ||||    
T  38011762 atca 38011765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 41566228 - 41566102
Alignment:
Q  12 cgtaagaactcaaatcgaggaatgaccacaataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaaaccaaaccaca 111  Q
    |||||||||||| |||| || ||||    |||| |||||||| || |||||| |||||||||||||||||||  ||||  |||| | ||| |||||||||    
T  41566228 cgtaagaactcagatcgtgggatgagtctaatacgttagtaaccagacccttatgggttaacagaaccataccctttcgggtttataaaagcaaaccaca 41566129  T
Q  112 tcataaagaggccaaaagtcttcaacca 139  Q
    ||| ||| ||||||||||||||| ||||    
T  41566128 tca-aaataggccaaaagtcttcgacca 41566102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 39228945 - 39228857
Alignment:
Q  12 cgtaagaactcaaatcgaggaatgaccacaataagttagtaatcaaacccttttgggttaacagaaccatacattttcaagtttttgaa 100  Q
    |||||||||||| ||||||| ||||    |||| |||||||| || | ||||| |||||||||||||||||   ||||| |||||||||    
T  39228945 cgtaagaactcagatcgagggatgagtcgaatacgttagtaaccagaacctttcgggttaacagaaccatagcctttcaggtttttgaa 39228857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University