View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21445_high_6_N (Length: 304)

Name: NF21445_high_6_N
Description: NF21445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21445_high_6_N
NF21445_high_6_N
[»] chr2 (4 HSPs)
chr2 (16-281)||(41942067-41942332)
chr2 (56-144)||(22084801-22084889)
chr2 (32-101)||(21616740-21616809)
chr2 (57-100)||(23921256-23921299)
[»] chr8 (8 HSPs)
chr8 (16-101)||(24362214-24362299)
chr8 (32-90)||(24669411-24669469)
chr8 (29-101)||(7658438-7658510)
chr8 (32-89)||(18170506-18170563)
chr8 (32-89)||(18634074-18634131)
chr8 (66-103)||(30133124-30133161)
chr8 (40-101)||(39954291-39954352)
chr8 (66-102)||(13203653-13203689)
[»] chr3 (5 HSPs)
chr3 (32-89)||(5441055-5441112)
chr3 (56-136)||(16192729-16192807)
chr3 (43-89)||(5407271-5407317)
chr3 (40-101)||(49505166-49505227)
chr3 (60-104)||(7614424-7614468)
[»] chr1 (5 HSPs)
chr1 (39-104)||(28674785-28674850)
chr1 (34-100)||(36878441-36878507)
chr1 (56-101)||(2784558-2784603)
chr1 (32-100)||(398778-398846)
chr1 (30-90)||(17754287-17754347)
[»] chr6 (10 HSPs)
chr6 (16-101)||(20518307-20518392)
chr6 (27-111)||(32839647-32839732)
chr6 (30-87)||(25038097-25038154)
chr6 (62-101)||(8931614-8931653)
chr6 (32-101)||(7086773-7086842)
chr6 (32-101)||(9658857-9658926)
chr6 (56-104)||(5462688-5462736)
chr6 (32-100)||(7625100-7625168)
chr6 (32-100)||(17341677-17341745)
chr6 (41-101)||(26562676-26562736)
[»] chr7 (8 HSPs)
chr7 (33-101)||(22484004-22484072)
chr7 (16-90)||(27945003-27945077)
chr7 (32-101)||(19206028-19206097)
chr7 (56-131)||(8160418-8160491)
chr7 (32-87)||(2425759-2425814)
chr7 (32-90)||(11722121-11722179)
chr7 (32-141)||(26329356-26329463)
chr7 (32-101)||(22602722-22602791)
[»] scaffold0123 (1 HSPs)
scaffold0123 (56-141)||(44499-44582)
[»] scaffold0168 (1 HSPs)
scaffold0168 (19-131)||(21008-21118)
[»] chr4 (6 HSPs)
chr4 (19-100)||(24343472-24343553)
chr4 (34-90)||(7012046-7012102)
chr4 (34-89)||(2234230-2234285)
chr4 (32-98)||(847929-847995)
chr4 (56-101)||(903924-903969)
chr4 (56-101)||(22440612-22440657)
[»] scaffold0018 (1 HSPs)
scaffold0018 (40-88)||(192274-192322)
[»] scaffold0004 (1 HSPs)
scaffold0004 (40-90)||(92793-92843)
[»] scaffold0020 (1 HSPs)
scaffold0020 (16-101)||(135324-135409)
[»] scaffold1528 (1 HSPs)
scaffold1528 (30-90)||(1011-1071)
[»] scaffold0022 (1 HSPs)
scaffold0022 (32-104)||(90821-90893)
[»] chr5 (1 HSPs)
chr5 (66-125)||(22423802-22423859)


Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 41942067 - 41942332
Alignment:
Q  16 gatacggacgcctgatacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattatatatgagttggtatcg 115  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  41942067 gatacggacgcctgatacgacacagacactgacacgcagtcaccgttaaaaatttgagaaaattacataattcagtataattatatatgagttggtatca 41942166  T
Q  116 tgtcggtgtcaaacacaacacttgtctgagaagtgtctttgcttcatatgtacatatatttaaggaaattacgtaattagattttttacaataaaatcaa 215  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41942167 tgtcggtgtcaaacacaacacgtgtctgagaagtgtctttgcttcatatgtacatatatttaaggaaattacgtaattagattttttacaataaaatcaa 41942266  T
Q  216 tcacatgaccatgaaaattgtttggttatattcataattatttttaaagtcatgcatatgaatgat 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41942267 tcacatgaccatgaaaattgtttggttatattcataattatttttaaagtcatgcatatgaatgat 41942332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 22084889 - 22084801
Alignment:
Q  56 caccgttaaaaatttgagaaaattacataattcagaataattatatatgagttggtatcgtgtcggtgtcaaacacaacacttgtctga 144  Q
    ||||||||| ||||||||||||| | |||||||||  ||||| |||||| |  ||||||||||| |||||  ||||||||| |||||||    
T  22084889 caccgttaataatttgagaaaatcatataattcagtgtaattttatatgtgccggtatcgtgtcagtgtcggacacaacacgtgtctga 22084801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 21616740 - 21616809
Alignment:
Q  32 acgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattatat 101  Q
    ||||||| ||||| ||||||| | ||||| ||| ||||||||||||| |||||||||||  |||||||||    
T  21616740 acgacacggacacggacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattatat 21616809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 23921256 - 23921299
Alignment:
Q  57 accgttaaaaatttgagaaaattacataattcagaataattata 100  Q
    |||||||| |||||||||||||||||||||||||  ||||||||    
T  23921256 accgttaataatttgagaaaattacataattcagtgtaattata 23921299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 24362299 - 24362214
Alignment:
Q  16 gatacggacgcctgatacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattatat 101  Q
    ||||||||| || |||||||||||||||||||||||| | ||||| ||| ||||||||| ||| |||||||||||  |||||||||    
T  24362299 gatacggacaccggatacgacacagacaccgacacgccgacaccgctaataatttgagagaatcacataattcagtgtaattatat 24362214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 24669411 - 24669469
Alignment:
Q  32 acgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcag 90  Q
    ||||||||||||| ||||||| | ||||||||| |||||||| ||||||||||||||||    
T  24669411 acgacacagacactgacacgctgacaccgttaataatttgaggaaattacataattcag 24669469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 7658438 - 7658510
Alignment:
Q  29 gatacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattatat 101  Q
    ||||| ||||||||| ||| |||| | ||||  ||| |||||||||||||||||||||||||  |||||||||    
T  7658438 gatacaacacagacatcgatacgccgacaccactaataatttgagaaaattacataattcagtgtaattatat 7658510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 18170563 - 18170506
Alignment:
Q  32 acgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattca 89  Q
    ||||||| ||||| ||||||| | |||  |||||||||||| ||||||||||||||||    
T  18170563 acgacacggacactgacacgccgacacaattaaaaatttgaaaaaattacataattca 18170506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 18634131 - 18634074
Alignment:
Q  32 acgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattca 89  Q
    ||||||| ||||| ||||||| | |||  |||||||||||| ||||||||||||||||    
T  18634131 acgacacggacactgacacgccgacacaattaaaaatttgaaaaaattacataattca 18634074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 30133124 - 30133161
Alignment:
Q  66 aatttgagaaaattacataattcagaataattatatat 103  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  30133124 aatttgagaaaataacataattcagcataattatatat 30133161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 39954352 - 39954291
Alignment:
Q  40 gacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattatat 101  Q
    ||||||||||||| | ||||| ||| ||||||||||||| |||||||| ||  |||||||||    
T  39954352 gacaccgacacgccgacaccgctaataatttgagaaaatcacataatttagtgtaattatat 39954291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 13203653 - 13203689
Alignment:
Q  66 aatttgagaaaattacataattcagaataattatata 102  Q
    |||||||||||||||||||||||||  ||||||||||    
T  13203653 aatttgagaaaattacataattcagtgtaattatata 13203689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 5441112 - 5441055
Alignment:
Q  32 acgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattca 89  Q
    ||||||||||||| ||||||| ||||||| ||||||||||||||||| ||||||||||    
T  5441112 acgacacagacactgacacgccgtcaccgctaaaaatttgagaaaatcacataattca 5441055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 16192807 - 16192729
Alignment:
Q  56 caccgttaaaaatttgagaaaattacataattcagaataattatatatgagttggtatcgtgtcggtgtcaaacacaacac 136  Q
    ||||||||| ||||||||||||| |||||||||||  ||||  |||||| |||| | |||||||||||||| |||| ||||    
T  16192807 caccgttaataatttgagaaaataacataattcagtgtaat--tatatgtgttgatgtcgtgtcggtgtcagacacgacac 16192729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 5407317 - 5407271
Alignment:
Q  43 accgacacgcagtcaccgttaaaaatttgagaaaattacataattca 89  Q
    |||||||||| | ||||| ||||||||||||||||| ||||||||||    
T  5407317 accgacacgccgacaccgctaaaaatttgagaaaatcacataattca 5407271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 49505227 - 49505166
Alignment:
Q  40 gacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattatat 101  Q
    |||||||||||||||  |||| ||| ||||||||||||| |||||||| ||  |||||||||    
T  49505227 gacaccgacacgcagagaccgctaataatttgagaaaatcacataatttagtgtaattatat 49505166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 7614468 - 7614424
Alignment:
Q  60 gttaaaaatttgagaaaattacataattcagaataattatatatg 104  Q
    ||||| ||||| ||||||| ||||||||||| |||||||||||||    
T  7614468 gttaataatttaagaaaatcacataattcagtataattatatatg 7614424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 28674785 - 28674850
Alignment:
Q  39 agacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattatatatg 104  Q
    |||| |||||||||   ||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  28674785 agacgccgacacgctaacaccgttaataatttgagaaaattacataattcagtataattatatatg 28674850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 36878441 - 36878507
Alignment:
Q  34 gacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattata 100  Q
    |||| |||||| ||||||| | ||||| ||| ||||||||||||| |||||||||||  ||||||||    
T  36878441 gacatagacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattata 36878507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 2784558 - 2784603
Alignment:
Q  56 caccgttaaaaatttgagaaaattacataattcagaataattatat 101  Q
    ||||||||||||||| ||||||| |||||||| || ||||||||||    
T  2784558 caccgttaaaaatttaagaaaatcacataattgagtataattatat 2784603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 398846 - 398778
Alignment:
Q  32 acgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattata 100  Q
    ||||||| ||||| ||||||| | ||||| ||| ||||||| ||||| |||||||||||  ||||||||    
T  398846 acgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaattata 398778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 17754287 - 17754347
Alignment:
Q  30 atacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcag 90  Q
    ||||||||||||| | ||||| | | ||||| ||| ||||||| |||||||||||||||||    
T  17754287 atacgacacagacgctgacacaccgacaccgctaataatttgaaaaaattacataattcag 17754347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 20518307 - 20518392
Alignment:
Q  16 gatacggacgcctgatacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattatat 101  Q
    |||||||| ||| |||||||||||||||| ||||| |   ||||  ||| |||||||||||||||||||| |||| ||||||||||    
T  20518307 gatacggatgccggatacgacacagacactgacacactaacaccactaacaatttgagaaaattacataaatcagtataattatat 20518392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 32839732 - 32839647
Alignment:
Q  27 ctgatacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattat-atatgagttggt 111  Q
    ||||||||||||||||| ||||| || | ||| ||||| ||||||||||||| ||||||| ||| |||||||| ||||| ||||||    
T  32839732 ctgatacgacacagacatcgacatgctgacactgttaataatttgagaaaatcacataatccagtataattatcatatgtgttggt 32839647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 25038154 - 25038097
Alignment:
Q  30 atacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataatt 87  Q
    |||||||||||| || ||||||  | ||||||||| ||||||||||||||||||||||    
T  25038154 atacgacacagatactgacacgttgacaccgttaataatttgagaaaattacataatt 25038097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 101
Target Start/End: Complemental strand, 8931653 - 8931614
Alignment:
Q  62 taaaaatttgagaaaattacataattcagaataattatat 101  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  8931653 taaaaatttgagaaaataacataattcagtataattatat 8931614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 7086773 - 7086842
Alignment:
Q  32 acgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattatat 101  Q
    ||||||||||||||||||||  | ||| | ||| ||||||||||||| |||||||| ||  |||||||||    
T  7086773 acgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataatttagtgtaattatat 7086842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 9658857 - 9658926
Alignment:
Q  32 acgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattatat 101  Q
    ||||||| ||||| ||||||| | ||||| ||| ||||| ||||||| |||||||||||  |||||||||    
T  9658857 acgacacggacactgacacgccgacaccgctaataatttaagaaaatcacataattcagtgtaattatat 9658926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 5462688 - 5462736
Alignment:
Q  56 caccgttaaaaatttgagaaaattacataattcagaataattatatatg 104  Q
    ||||||||| ||||||||||||| ||||||||||   ||||||||||||    
T  5462688 caccgttaataatttgagaaaatcacataattcattgtaattatatatg 5462736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 7625100 - 7625168
Alignment:
Q  32 acgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattata 100  Q
    ||||||||||||||||||||  | ||| | ||| ||||||||||||| | |||||| || |||||||||    
T  7625100 acgacacagacaccgacacgtcgacacggataataatttgagaaaatgatataatttagtataattata 7625168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 17341745 - 17341677
Alignment:
Q  32 acgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattata 100  Q
    ||||||| | ||| ||||||| | ||||||||| ||||||| ||||| |||||||||||  ||||||||    
T  17341745 acgacacgggcactgacacgccgacaccgttaataatttgataaaatcacataattcagtgtaattata 17341677  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 26562676 - 26562736
Alignment:
Q  41 acaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattatat 101  Q
    |||| ||||||| | ||| | ||||||||||||||||| |||||||||||  |||||||||    
T  26562676 acacggacacgccgacactgctaaaaatttgagaaaatcacataattcagtgtaattatat 26562736  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 22484004 - 22484072
Alignment:
Q  33 cgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattatat 101  Q
    |||||||||||| ||||||| | ||||| ||| ||||| |||||||| |||||||||| ||||||||||    
T  22484004 cgacacagacactgacacgccgacaccgctaataattttagaaaattgcataattcagtataattatat 22484072  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 27945003 - 27945077
Alignment:
Q  16 gatacggacgcctgatacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcag 90  Q
    ||||||||| || || ||||||| ||||| ||||||| | ||||  ||| |||||||||||||||||||||||||    
T  27945003 gatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaattacataattcag 27945077  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 19206028 - 19206097
Alignment:
Q  32 acgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattatat 101  Q
    ||||||| |||||| |||||| | ||||| ||| ||||||||||||| ||||||||||  ||||||||||    
T  19206028 acgacacggacaccaacacgccgacaccgctaataatttgagaaaatcacataattcattataattatat 19206097  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 8160418 - 8160491
Alignment:
Q  56 caccgttaaaaatttgagaaaattacataattcagaataattatatatgagttggtatcgtgtcggtgtcaaacac 131  Q
    ||||| ||| ||||| |||||||||||||||| ||  ||||||||| ||  ||||||||||||||||||| |||||    
T  8160418 caccgctaataatttaagaaaattacataatttagtgtaattatatgtg--ttggtatcgtgtcggtgtcgaacac 8160491  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 2425814 - 2425759
Alignment:
Q  32 acgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataatt 87  Q
    |||||||||| || ||||||| | ||||||||| ||||||||||||| ||||||||    
T  2425814 acgacacagatactgacacgccggcaccgttaataatttgagaaaatcacataatt 2425759  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 11722179 - 11722121
Alignment:
Q  32 acgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcag 90  Q
    ||||||| ||||| ||||||| | ||||| ||| ||||||||||||| |||||||||||    
T  11722179 acgacacggacactgacacgccgacaccgctaacaatttgagaaaatcacataattcag 11722121  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 26329463 - 26329356
Alignment:
Q  32 acgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattatatatgagttggtatcgtgtcggtgtcaaacac 131  Q
    ||||||||||||| ||||||| | || |||||| ||||||||||||  ||| |||||||  ||||||||| ||  | ||  |||||||||||||| ||||    
T  26329463 acgacacagacactgacacgccgacatcgttaataatttgagaaaaacacacaattcagtgtaattatatgtg--tcggcgtcgtgtcggtgtcagacac 26329366  T
Q  132 aacacttgtc 141  Q
     |||| ||||    
T  26329365 gacacgtgtc 26329356  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 22602791 - 22602722
Alignment:
Q  32 acgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattatat 101  Q
    ||||||||| ||| ||||||| | |||||| ||  |||||||||||| |||||||||||  |||||||||    
T  22602791 acgacacaggcactgacacgccgacaccgtaaattatttgagaaaatcacataattcagtgtaattatat 22602722  T

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Target: scaffold0123 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 44582 - 44499
Alignment:
Q  56 caccgttaaaaatttgagaaaattacataattcagaataattatatatgagttggtatcgtgtcggtgtcaaacacaacacttgtc 141  Q
    ||||| ||||||||||||||||| |||||||||||  ||||  |||||| || ||||||||||||||||   ||||||||| ||||    
T  44582 caccgctaaaaatttgagaaaatcacataattcagtgtaat--tatatgtgtcggtatcgtgtcggtgttggacacaacacgtgtc 44499  T

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Target: scaffold0168 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 21008 - 21118
Alignment:
Q  19 acggacgcctgatacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattatatatgagttggtatcgtgt 118  Q
    |||||| || || ||||||| ||||| |||| || | ||| ||||| ||||||||||||| |||||| || | |||||  |||||| || ||||||||||    
T  21008 acggacaccagacacgacacggacactgacatgctgacacggttaataatttgagaaaatcacataagtcggtataat--tatatgtgtcggtatcgtgt 21105  T
Q  119 cggtgtcaaacac 131  Q
    |||||||| ||||    
T  21106 cggtgtcagacac 21118  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 24343472 - 24343553
Alignment:
Q  19 acggacgcctgatacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattata 100  Q
    |||||| || || ||||||| ||| ||||||||| | ||| | ||| |||||||||||||||||||||||||  ||||||||    
T  24343472 acggacaccggacacgacacggacgccgacacgccgacacggataataatttgagaaaattacataattcagtgtaattata 24343553  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 7012046 - 7012102
Alignment:
Q  34 gacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcag 90  Q
    ||||| ||||||||||||| | ||||| ||| ||||||||||||| |||||||||||    
T  7012046 gacacggacaccgacacgccgacaccgataataatttgagaaaatgacataattcag 7012102  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 2234230 - 2234285
Alignment:
Q  34 gacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattca 89  Q
    |||||||| || ||||||| ||||||||| | ||||||||||||| ||||||||||    
T  2234230 gacacagatactgacacgctgtcaccgttgataatttgagaaaatcacataattca 2234285  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 847929 - 847995
Alignment:
Q  32 acgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataatta 98  Q
    ||||||||||||| ||||||| |   ||| ||| ||||||||||||||||||||||||  |||||||    
T  847929 acgacacagacactgacacgccgatgccgctaataatttgagaaaattacataattcactataatta 847995  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 903924 - 903969
Alignment:
Q  56 caccgttaaaaatttgagaaaattacataattcagaataattatat 101  Q
    ||||||||| ||||||||||||| |||||||||||  |||||||||    
T  903924 caccgttaataatttgagaaaatcacataattcagtgtaattatat 903969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 22440657 - 22440612
Alignment:
Q  56 caccgttaaaaatttgagaaaattacataattcagaataattatat 101  Q
    ||||||||| ||||||||||||| |||||||||||  |||||||||    
T  22440657 caccgttaataatttgagaaaatcacataattcagtgtaattatat 22440612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 192322 - 192274
Alignment:
Q  40 gacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattc 88  Q
    ||||| ||||||| | ||||||||| |||||||||||||||||||||||    
T  192322 gacactgacacgccgacaccgttaataatttgagaaaattacataattc 192274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 92793 - 92843
Alignment:
Q  40 gacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcag 90  Q
    ||||| ||||||| | ||||| ||| |||||||||||||||||||||||||    
T  92793 gacactgacacgccgacaccgctaataatttgagaaaattacataattcag 92843  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 135409 - 135324
Alignment:
Q  16 gatacggacgcctgatacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattatat 101  Q
    ||||||||| ||  |||||||||||||||| |||| | | ||| | ||| ||||||||||||| ||||||||| |  |||||||||    
T  135409 gatacggacaccgaatacgacacagacaccaacacaccgacactgctaataatttgagaaaatcacataattctgtgtaattatat 135324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 1011 - 1071
Alignment:
Q  30 atacgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcag 90  Q
    ||||||||||||| | ||||| | | ||||| ||| ||||||| |||||||||||||||||    
T  1011 atacgacacagacgctgacacaccgacaccgctaataatttgaaaaaattacataattcag 1071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 90821 - 90893
Alignment:
Q  32 acgacacagacaccgacacgcagtcaccgttaaaaatttgagaaaattacataattcagaataattatatatg 104  Q
    ||||||||||||| ||||| |   |||| |||| ||||||||||||| | |||||||||  ||||||||||||    
T  90821 acgacacagacactgacacaccaacaccattaataatttgagaaaatcatataattcagtgtaattatatatg 90893  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 22423859 - 22423802
Alignment:
Q  66 aatttgagaaaattacataattcagaataattatatatgagttggtatcgtgtcggtgtc 125  Q
    ||||||||||||| ||||||||||  ||||||||||||  || ||| |||||||||||||    
T  22423859 aatttgagaaaatcacataattcaatataattatatat--gtcggtgtcgtgtcggtgtc 22423802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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