View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21445_high_8 (Length: 373)
Name: NF21445_high_8
Description: NF21445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21445_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 357
Target Start/End: Complemental strand, 42325907 - 42325568
Alignment:
| Q |
17 |
atgaacagaaccaaaccaatatcaagagtggtgggagcacctgaacctgtatttttacaccctatagaatccctcttttctatagatctaattaaattat |
116 |
Q |
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| T |
42325907 |
atgaacagaaccaaaccaatatcaagagtggtgggagcacctgaacctgtatttttacaccctatagaatccctcttttctatagatctaattaaattat |
42325808 |
T |
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| Q |
117 |
atcttgcatgtaacatatttaaaatgggaaaaataacacttaaccttgaaagatacttttaagacaatataaataagaagctcaacataactccttttcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42325807 |
atcttgcatgtaacatatttaaaatgggaaaaataacacttaaccttgaaagatacttttaagacaatataaataagaagctcaacataactcc-tttcc |
42325709 |
T |
|
| Q |
217 |
tcaacaagaagagttatctgagttgtactcttaagtttccactcaactttcttttctctttttcactcttttgtgaaatggcaagaatgtctcaagaacc |
316 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42325708 |
tcaacaagaagaattatctgagttgtactcttaagtttccactcaaatttcttttctctttttcactcttttgtgaaatggcaagaatgtctcaagaacc |
42325609 |
T |
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| Q |
317 |
actcattgttggaagagtgataggagaagttcttgattcct |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
42325608 |
actcattgttggaagagtgataggagaagttcttgattcct |
42325568 |
T |
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