View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21445_low_10 (Length: 318)
Name: NF21445_low_10
Description: NF21445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21445_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 4903914 - 4904132
Alignment:
| Q |
20 |
ggtttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtttgttgcggtgatgctggcttctttggctgtg |
119 |
Q |
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| T |
4903914 |
ggtttttgggtaggttgaattcgtacgcgtttttgttttatgagtggaattggaatctgaaggattgtttgttgcggtgatgctggcttctttggctgtg |
4904013 |
T |
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| Q |
120 |
tggctgtttggtggccttctggttgttctgtagtcgtgtttctctggcttaacagtctgttgcggtgctggttttcggttctggtgtaggcagttagctt |
219 |
Q |
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| T |
4904014 |
tggctgtttggtggccttctggttgttctgtagtcgtgtttctctggtttaacagtctgttgcggtgctggttttcggttctggtgtaggcagttagctt |
4904113 |
T |
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| Q |
220 |
ctaagctgcttctttagga |
238 |
Q |
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||||||||||||||||||| |
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| T |
4904114 |
ctaagctgcttctttagga |
4904132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 1557419 - 1557474
Alignment:
| Q |
49 |
tgtttgttttatgagtggaattggaatccgaaggattgtttgttgcggtgatgctg |
104 |
Q |
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| T |
1557419 |
tgtttgttttacgaatggaattggaatccgaagaattgtctgttgcgttgaggctg |
1557474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 22153641 - 22153441
Alignment:
| Q |
22 |
tttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtttgttgcggtgatgctggcttctttggctgtgtg |
121 |
Q |
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| T |
22153641 |
tttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtttgtttgttgcggtgatgctggcttctttggttgtgcg |
22153542 |
T |
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| Q |
122 |
gctgtttggtggccttctggttgttctgtagtcgtgtttctctggct-taacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttc |
220 |
Q |
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|||||||||| |||||||||||||| || ||||| |||||||||| | ||||||||| ||| ||||||||||||| ||| ||||||| |||||||||||| |
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| T |
22153541 |
gctgtttggtcgccttctggttgttatgcagtcgcgtttctctggttataacagtctattgtggtgctggttttcagttatggtgtatgcagttagcttc |
22153442 |
T |
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| Q |
221 |
t |
221 |
Q |
| |
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| T |
22153441 |
t |
22153441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 22209556 - 22209356
Alignment:
| Q |
22 |
tttttgggtaggttgaattcatacgcgtgtttgttttatgagtggaattggaatccgaaggattgtttgttgcggtgatgctggcttctttggctgtgtg |
121 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| | |
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| T |
22209556 |
tttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtttgtttgttgcggtgatgctggcttctttggttgtgcg |
22209457 |
T |
|
| Q |
122 |
gctgtttggtggccttctggttgttctgtagtcgtgtttctctggct-taacagtctgttgcggtgctggttttcggttctggtgtaggcagttagcttc |
220 |
Q |
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|||||||||| |||||||||||||| || ||||| |||||||||| | ||||||||| ||| ||||||||||||| ||| ||||||| |||||||||||| |
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| T |
22209456 |
gctgtttggtcgccttctggttgttatgcagtcgcgtttctctggttataacagtctattgtggtgctggttttcagttatggtgtatgcagttagcttc |
22209357 |
T |
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| Q |
221 |
t |
221 |
Q |
| |
|
| |
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|
| T |
22209356 |
t |
22209356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 38185318 - 38185265
Alignment:
| Q |
49 |
tgtttgttttatgagtggaattggaatccgaaggattgtttgttgcggtgatgc |
102 |
Q |
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| T |
38185318 |
tgtttgttttacgagtggaattggaatccgaaggaatgcttgttgcggtgatgc |
38185265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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