View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21445_low_14 (Length: 245)
Name: NF21445_low_14
Description: NF21445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21445_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 47581672 - 47581899
Alignment:
| Q |
1 |
ctttcttttccctctttgttcattgctctccttctcccatcatacaagctgctattgataatggcacacatgctttctataactgcacacggaacaacac |
100 |
Q |
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| T |
47581672 |
ctttcttttccctctttgttcattgctctccttctcccatcatacaagctgctattgataatggcacacatgctttctataactgcacacggaacaacac |
47581771 |
T |
|
| Q |
101 |
ttctaataccaataactcttaccgttccaacatcaaaacactcctagattggctctcatccaatagtagtaacaatgccagatactacaacgccacagtt |
200 |
Q |
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| T |
47581772 |
ttctaataccaataactcttaccgttccaacatcaaaacactcctagattggctctcatccaatagtagtaacaatgccagatactacaacgccacagtt |
47581871 |
T |
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| Q |
201 |
gcaagtgataacactctggacactgtct |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
47581872 |
gcaagtgataacactctggacactgtct |
47581899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 47571974 - 47572173
Alignment:
| Q |
1 |
ctttcttttccctctttgttcattgctctccttctcccatcatacaagctgctattgataatggcacacatgctttctataactgcacacggaacaacac |
100 |
Q |
| |
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||||||||||||||||| |||| |||| |||||||||||||||||||||| || | || ||| |||||| ||| ||||||||||||| |||||| || |
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| T |
47571974 |
ctttcttttccctcttttttcactgctttccttctcccatcatacaagctcctgctaatgatgcaacacatccttactataactgcacaaggaacattac |
47572073 |
T |
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| Q |
101 |
ttctaataccaataactcttaccgttccaacatcaaaacactcctagattggctctcatccaatagtagtaacaatgccagatactacaacgccacagtt |
200 |
Q |
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| T |
47572074 |
ttctgcttccggttatgcttaccgttccaacgtcaaaacactcctagactggctctcctccaatagcagtaacaatgccagatactacaatgccaaagtt |
47572173 |
T |
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