View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21445_low_17 (Length: 204)

Name: NF21445_low_17
Description: NF21445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21445_low_17
NF21445_low_17
[»] chr5 (3 HSPs)
chr5 (1-80)||(26439786-26439865)
chr5 (1-80)||(26452051-26452130)
chr5 (75-134)||(26440197-26440256)


Alignment Details
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 26439786 - 26439865
Alignment:
Q  1 ttgaattcaagcaaggcagaggaatcatcatggttgcacaatggcaccaatgaagaaacccatgaaggaaaaacaaaaag 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26439786 ttgaattcaagcaaggcagaggaatcatcatggttgcacaatggcaccaatgaagaaacccatgaaggaaaaacaaaaag 26439865  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 26452051 - 26452130
Alignment:
Q  1 ttgaattcaagcaaggcagaggaatcatcatggttgcacaatggcaccaatgaagaaacccatgaaggaaaaacaaaaag 80  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  26452051 ttgaattcaagcaaggcagaggaatcatcatggttgcacaacggcaccaatgaagaagcccatgaaggaaaaacaaaaag 26452130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 26440256 - 26440197
Alignment:
Q  75 aaaaaggaattttcgcaataaattttttaaaggcagtgtctccggggcactagtaaagat 134  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  26440256 aaaaaggaattttcgcaataaattttttaaatgcagtgtctccggggcactagttaagat 26440197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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