View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21445_low_2 (Length: 609)
Name: NF21445_low_2
Description: NF21445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21445_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 429; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 13 - 593
Target Start/End: Original strand, 29523214 - 29523794
Alignment:
| Q |
13 |
gatgaagagagatatgcactagatgatagcaaccaccaaatgatacttaaagctaaatttgatgctttagagaaggatacgcagagcatttttctcgata |
112 |
Q |
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| T |
29523214 |
gatgaagagacatatgcactagatgataataacattcaaatgatacttaaagatatatttgatgctttagagaaagatacgcagagtatttttctcgata |
29523313 |
T |
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| Q |
113 |
ttgtttgttgcttcaaaggatatgggttgacagaggtccaaaatatactttgtgctcatcatgggtacaatgtgaagcatcaaactgaacttttgattta |
212 |
Q |
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| T |
29523314 |
ttgtttgttgcttcaaaggatatgagttgacagaggtccaaaatatacttcgcgctcatcatggttacaatgtgaagcatcacactgaagttttgattta |
29523413 |
T |
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| Q |
213 |
tgaatctatgataagtatttgcgatggtaaggtgataatacaagacttaatcgagaaaatggctaaagaacttgtttgtcaagaatcaccaacagagcct |
312 |
Q |
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| T |
29523414 |
tgaatctatgataagtatcagtgatggtaaggtgataatacaccacttgatcgagaaaatggctaaagaacttgttcgtcgagaatcaccaacagagcct |
29523513 |
T |
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| Q |
313 |
gggaaatgtagtagac--tggttgcctgaagatataattcatgtcttaaaggaaaatacggtaatcttattctatgctaacatcagaataatttatgtct |
410 |
Q |
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| T |
29523514 |
gggaaatgtagtagactatggttgcctgaagatataattcatgtcttaaaggaaaatacggtaatcttactgtatactaacatcaaaataatttatg--t |
29523611 |
T |
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| Q |
411 |
taacgactattttataacttcctgtatgagattttcaaaattatctctttaggttacaaatacaaacttttaccactaaactgactttacattgactatt |
510 |
Q |
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| T |
29523612 |
taacgactattttataatttcctgtatgagattttcaaaattatctctttaggttacaaatacaaactcttaccactaaactgacttcacattgactatt |
29523711 |
T |
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| Q |
511 |
ttccctgaaatttatttgtctacatgtgtttacagggaagtagtaaaattgaaattatacatctggatatcccctcaactgaa |
593 |
Q |
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| T |
29523712 |
ttcccagaaatttatgtgtctacatgtgtttacagggaagtagtaaaattgaaattatacatctggatatcccctcaactgaa |
29523794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 29473812 - 29473922
Alignment:
| Q |
79 |
ttagagaaggatacgcagagcattttt-ctcgatattgtttgttgcttcaaaggatatgggttgacagaggtccaaaatatactttgtgctcatcatggg |
177 |
Q |
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| T |
29473812 |
ttagagaaagataagcagagtattttttctggatattgtttgttgcttcaaaggatatgagtcgataaaagtccaaaatacactttgtactcatcatagt |
29473911 |
T |
|
| Q |
178 |
tacaatgtgaa |
188 |
Q |
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| T |
29473912 |
tacaatgtgaa |
29473922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 368
Target Start/End: Original strand, 29473957 - 29474080
Alignment:
| Q |
247 |
ataatacaagacttaatcgagaaaatggctaaagaacttgtttgtcaagaatcaccaacagagcctgggaaatgtagtag--actggttgcctgaagata |
344 |
Q |
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| T |
29473957 |
ataatacacgacttgatcgagaaaatggctaaagaacttgttcatcgagaatcacccatggagtctgggaaatgtggtaggttatggttgcttgaggata |
29474056 |
T |
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| Q |
345 |
taattcatgtcttaaaggaaaata |
368 |
Q |
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|||| ||||||||| |||||||| |
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| T |
29474057 |
caatttatgtcttaatggaaaata |
29474080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 29827387 - 29827462
Alignment:
| Q |
101 |
tttttctcgatattgtttgttgcttcaaaggatatgggttgacagaggtccaaaatatactttgtgctcatcatgg |
176 |
Q |
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|||||||||| |||| ||||||||||||||| |||| ||| ||||||| || |||| ||||||||||||||||| |
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| T |
29827387 |
tttttctcgacattgcttgttgcttcaaagggtatgatttgggagaggtcaaagatattctttgtgctcatcatgg |
29827462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 271 - 327
Target Start/End: Original strand, 28141118 - 28141174
Alignment:
| Q |
271 |
atggctaaagaacttgtttgtcaagaatcaccaacagagcctgggaaatgtagtaga |
327 |
Q |
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| T |
28141118 |
atgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtaga |
28141174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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