View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21445_low_3 (Length: 523)
Name: NF21445_low_3
Description: NF21445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21445_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 4366325 - 4366050
Alignment:
| Q |
1 |
agttaaaagtgtgttcttttcggtgaagagggagagagaatcaaccccaaacccactccttgtccatcaattgagaagaatcaaaattcaaaccccttaa |
100 |
Q |
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| T |
4366325 |
agttaaaagtatgttcttttccgcgaaaagggagagagaatcaaccccaaaccctctccttgtccatcaatagagaagaatcaaaattcaaaccccttaa |
4366226 |
T |
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| Q |
101 |
ttctccctatgtgggcagcaacttagaaggagaagaagtaattagagatgaagagaagtcacgagaatggaagcttggaattgtagagatcaaagtcaat |
200 |
Q |
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| T |
4366225 |
ttctccctatgtgggcagcaacttagaaggagaagaagtaattagagatgaagagaagtcacgagaatggaagcttggaattgtagagatcaaagtcaat |
4366126 |
T |
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| Q |
201 |
ttggaaatttcatcaatctcttcttaagagagcctaaggtaacatagaatcccttccctaaaacatctatagggtg |
276 |
Q |
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| T |
4366125 |
ttggaaatttcatcaatctcttcttaagagagcctaaggtaacatagaatcccttccttaaaacatctatagggtg |
4366050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 345 - 506
Target Start/End: Complemental strand, 4366051 - 4365890
Alignment:
| Q |
345 |
tgattgaatgtttgttgttgtgagctgatttttattgcatacaaaatgataattagtttgcatgttgtttttaattgagtttgatgggtatgagttagtt |
444 |
Q |
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||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4366051 |
tgattgaatgtttgttgttatgagatgatttttgttgcatacaaaatgataattagtttgcatgttgtttttaattgagtttgatgggtatgagttagtt |
4365952 |
T |
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| Q |
445 |
tataactgaaataaatcattacggagatgaacttgaagtttggttccggatatgaactttgt |
506 |
Q |
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| T |
4365951 |
tataactgaaataaatcattacggatatgaacttgaagtttggttccggatatgaactttgt |
4365890 |
T |
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