View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21445_low_4 (Length: 439)
Name: NF21445_low_4
Description: NF21445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21445_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 11827860 - 11827721
Alignment:
| Q |
10 |
agatgaaagagagaatgatccatcatatattggtagtgtattcaattctaccataaatgttattgaaaatggaaaagaggagggagtagtacactagtat |
109 |
Q |
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| T |
11827860 |
agatgaaagagagaatgatccatcatatattggtagtgtattcaattctaccataaatgttattgaaaatggaaaagaggagggagtagtacactagtat |
11827761 |
T |
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| Q |
110 |
tttctttattccttgcttcttatatttgcgttgcttcatg |
149 |
Q |
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| T |
11827760 |
tttctttattccttgcttcttatatttgcgttgcttcatg |
11827721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 215 - 354
Target Start/End: Complemental strand, 11827655 - 11827504
Alignment:
| Q |
215 |
acgcaagcaaaatcaagccatttctgatcgtgatgagggacgtactgttcttactgctgctggaataaccactgtactcaagcttcaggtaattt----- |
309 |
Q |
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| T |
11827655 |
acgcaagcaaaatcaagccgtttctgatcgtgatgagggacgtactgttcttactgctgctggaataaccactgtactcaagcttcaggtaatttagttt |
11827556 |
T |
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| Q |
310 |
agttattacgagagaatcata-------tgaaaatagtatccatcatatatt |
354 |
Q |
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| T |
11827555 |
agttattacgagagaatgatacttttagtgaaaatagtatccatcatatatt |
11827504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 23096347 - 23096289
Alignment:
| Q |
260 |
tgttcttactgctgctggaataaccactgtactcaagcttcaggtaatttagttattac |
318 |
Q |
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| T |
23096347 |
tgttcttactgctgctggaaaaaccaccgtactcaagcttcaggtaatttagttattac |
23096289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 23096010 - 23095962
Alignment:
| Q |
356 |
gtgtggataatgaacacactgccattgagaaacaccatgcatatgcttc |
404 |
Q |
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| T |
23096010 |
gtgtggataatgaactcactgccattgagaaccaccatgcatatgcttc |
23095962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 317
Target Start/End: Complemental strand, 11827922 - 11827871
Alignment:
| Q |
266 |
tactgctgctggaataaccactgtactcaagcttcaggtaatttagttatta |
317 |
Q |
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| T |
11827922 |
tactgctgctgtaaaaacaaccgtactcaagcttcaggtaatttacttatta |
11827871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 359
Target Start/End: Complemental strand, 23096186 - 23096158
Alignment:
| Q |
331 |
tgaaaatagtatccatcatatattggtgt |
359 |
Q |
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| T |
23096186 |
tgaaaatagtatccatcatatattggtgt |
23096158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 47344281 - 47344363
Alignment:
| Q |
235 |
tttctgatcgtgatgagggacgtactgttcttactgc---tgctggaataaccactgtactcaagcttcaggtaatttagttatta |
317 |
Q |
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| T |
47344281 |
tttctgatcgtgatgaggg---tagtgttcttactgctgctgctggaaaaaccaccgtactcaagcttcaggtaatttagttatta |
47344363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 47344596 - 47344657
Alignment:
| Q |
88 |
ggagggagtagtacactagtattttctttattccttgcttcttatatttgcgttgcttcatg |
149 |
Q |
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| T |
47344596 |
ggagggagtgggacactaatattttctttattccttgcttcttgtatttgccatgcttcatg |
47344657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 404
Target Start/End: Original strand, 47345124 - 47345175
Alignment:
| Q |
353 |
ttggtgtggataatgaacacactgccattgagaaacaccatgcatatgcttc |
404 |
Q |
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| T |
47345124 |
ttggtgtggataatgtactcgctaccattgagaaccaccatgcatatgcttc |
47345175 |
T |
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