View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21445_low_6 (Length: 387)
Name: NF21445_low_6
Description: NF21445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21445_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 259
Target Start/End: Original strand, 31858285 - 31858530
Alignment:
| Q |
13 |
aaaattgcagagtgagtcgaaatttcaaagtgatattgcaatgagaattctaaattaggattctagtcaagggttatagctctttcgtaaattgcaaaac |
112 |
Q |
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| T |
31858285 |
aaaattgcagagtgagtcgaaatttctaagtgatattgcaatgaaaattctaaattagaattctagtcaggggttatagctctttcgtaaattgcaaa-c |
31858383 |
T |
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| Q |
113 |
taaaccaccactttattattctcttttaaggatttgagttaaatgttagtgcaattaaacttagaaacttaatgtttaaggtccaatttatattgagaga |
212 |
Q |
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| T |
31858384 |
taaaccaccactttattattctcttttaaggatttgagttaaatattagtgcaattaaacttagaaacttaatctttaaggtccaatatatattgagaga |
31858483 |
T |
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| Q |
213 |
aaaaattcattatacaacatcaagttcacaaaaataaatacagagac |
259 |
Q |
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| T |
31858484 |
aaaaattcattatgcaacatcaagttcacaaaaataaatacagagac |
31858530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 309 - 387
Target Start/End: Original strand, 31858580 - 31858658
Alignment:
| Q |
309 |
gtttgagggactgtggcctctacctgtcctcttattctctcgtccctatctccacgaatatatgcacttcatatatcaa |
387 |
Q |
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| T |
31858580 |
gtttgagggactgtggcctctacctgtcttcttattctctcgtccctatctccacgaatatatgcacttcatatatcaa |
31858658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 32809836 - 32809994
Alignment:
| Q |
25 |
tgagtcgaaatttcaaagtgatattgcaatgagaatt-ctaaattaggattctagtcaagggttatagctctttcgtaaattgcaaaactaaaccaccac |
123 |
Q |
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| T |
32809836 |
tgagtcaaaatttcaaagtaaaattgcaatgagaaatactaaattgggattctagttaagaaatatgattcttttgtaaattgtagac--aaacctccac |
32809933 |
T |
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| Q |
124 |
tttattattctcttttaaggatttgagttaaatgttagtgcaattaaacttagaaacttaa |
184 |
Q |
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| T |
32809934 |
tttctttttctcttttaaggatttgagttaaggaatagtgcaattaaacctaaaaacttaa |
32809994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 198
Target Start/End: Complemental strand, 8965758 - 8965679
Alignment:
| Q |
120 |
ccactttattattctcttttaaggatttgagttaaatgttagtgcaattaaacttagaaacttaa-tgtttaaggtccaa |
198 |
Q |
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| T |
8965758 |
ccactttctttttctctattaaggatttgagttaatggatagtgaaattaaacctaaaaacttaagtgtttaaggtccaa |
8965679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 31255765 - 31255806
Alignment:
| Q |
158 |
ttagtgcaattaaacttagaaacttaatgtttaaggtccaat |
199 |
Q |
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| T |
31255765 |
ttagtgtaattaaacctagaaacttaatgtttaaggtccaat |
31255806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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