View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21445_low_7 (Length: 381)

Name: NF21445_low_7
Description: NF21445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21445_low_7
NF21445_low_7
[»] chr1 (4 HSPs)
chr1 (64-150)||(12978801-12978893)
chr1 (249-321)||(12979040-12979112)
chr1 (2-67)||(12978714-12978779)
chr1 (158-240)||(12978929-12979003)
[»] chr8 (1 HSPs)
chr8 (64-148)||(25183451-25183535)


Alignment Details
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 12978801 - 12978893
Alignment:
Q  64 catggacaacaatgtgaggttgatacttgcttccaattcaaatagagccttac------taatagatagtttaccaatagagcaaagaataga 150  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||      ||||||||||||||||||||||||||||||||||    
T  12978801 catggacaacaatgtgaggttgatacttgctcccaattcaaatagagccttactaattataatagatagtttaccaatagagcaaagaataga 12978893  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 12979040 - 12979112
Alignment:
Q  249 attagtgaaaggaagattgacttgcatgttagttaacatcttattaaacattttaaaatgcacatctggatca 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  12979040 attagtgaaaggaagattgacttgcatgttagttaacatcttattaaactttttaaaatgcacatcttgatca 12979112  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 12978714 - 12978779
Alignment:
Q  2 tatgaggtgaacactagtagaagaggacaatcgaagtcatgtttgatagtttaacataataacatg 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12978714 tatgaggtgaacactagtagaagaggacaatcgaagtcatgtttgatggtttaacataataacatg 12978779  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 12978929 - 12979003
Alignment:
Q  158 cctttgaaggattgaactattattttcacttaacgccatgacttcctcgtcttttagttttattttatttgaaaggaatttct 240  Q
    |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12978929 cctttgaaggattgaactattat--------aacgccatgacttcctcgtcttttagttttattttctttgaaaggaatttct 12979003  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 25183451 - 25183535
Alignment:
Q  64 catggacaacaatgtgaggttgatacttgcttccaattcaaatagagccttactaatagatagtttaccaatagagcaaagaata 148  Q
    ||||||||||||  |||| ||||| ||||||   || ||| ||||||| |||||||||  |||||||||||| |||||| |||||    
T  25183451 catggacaacaacatgagattgatgcttgctcgtaaatcacatagagctttactaataattagtttaccaattgagcaaggaata 25183535  T

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