View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21446_low_2 (Length: 276)
Name: NF21446_low_2
Description: NF21446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21446_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 49903210 - 49903451
Alignment:
| Q |
19 |
gaacaaaaacactagctagata----agctatagctactcacttctttcccaatggaaatagtgtcagtttccatgctccttcggacacattgcactttg |
114 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49903210 |
gaacaaaaacactagctagatatataagctatagctactcacttctttcccaatggaaatagtgtcagtttccatgctccttcggacacattgcactttg |
49903309 |
T |
|
| Q |
115 |
cacatgtaccaatcaagttggaaattctattattgtgtttgatatgagattacaagctgtagtatagccaaataaataaccaatttggcaaaaacaatta |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49903310 |
cacatgtaccaatcaagttggaaattctattattgtgtttgatctgagattacaagctgtagtatagccaaataaataatcaatttggcaaaaacaatta |
49903409 |
T |
|
| Q |
215 |
acatctataattaatactcatcacattaacactaagtttctg |
256 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49903410 |
acatctataattaatactcatcacactaacactaagtttctg |
49903451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 15991191 - 15991131
Alignment:
| Q |
159 |
tgagattacaagctgtagtatagccaaat-aaataaccaatttggcaaaaacaattaacat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||| |
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| T |
15991191 |
tgagattacaagctgtagtatagccaaataaaacaaccaatttggcaaaaaaaattaacat |
15991131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 15993707 - 15993767
Alignment:
| Q |
159 |
tgagattacaagctgtagtatagccaaat-aaataaccaatttggcaaaaacaattaacat |
218 |
Q |
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||||||||||| ||||||||||||||||| ||| ||| ||||||||| ||| ||||||||| |
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|
| T |
15993707 |
tgagattacaaactgtagtatagccaaataaaacaactaatttggcagaaaaaattaacat |
15993767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 190
Target Start/End: Original strand, 19847301 - 19847332
Alignment:
| Q |
159 |
tgagattacaagctgtagtatagccaaataaa |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
19847301 |
tgagattacaagctgtagtatagccaaataaa |
19847332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 9845092 - 9845205
Alignment:
| Q |
145 |
tattgtgtttgatatgagattacaagctgtagtatagccaaataaataaccaatttggcaaaaacaattaacat--ctataattaatactcatcacatta |
242 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||| || |
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| T |
9845092 |
tattgtgtttgatatgagattacaagttgtagtataggcaaacaaataaccaatttggcaaaatcaattaacattactataattaatactcatcacacta |
9845191 |
T |
|
| Q |
243 |
acactaagtttctg |
256 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
9845192 |
acactaagcttctg |
9845205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 41317898 - 41317823
Alignment:
| Q |
183 |
caaataaataaccaatttggcaaaaacaattaacat--ctataattaatactcatcacattaacactaagtttctg |
256 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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|
| T |
41317898 |
caaacaaataaccaatttggccaaaacaattaacattactataattaatactcatcacaccaacactaagtttctg |
41317823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 21161780 - 21161721
Alignment:
| Q |
192 |
aaccaatttggcaaaaacaattaacat--ctataattaatactcatcacattaacactaag |
250 |
Q |
| |
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||||||||||||||||| ||| ||||| ||||||||||||||||||||| | |||||||| |
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| T |
21161780 |
aaccaatttggcaaaaa-aatcaacatgactataattaatactcatcacacttacactaag |
21161721 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 114 - 246
Target Start/End: Complemental strand, 17749744 - 17749615
Alignment:
| Q |
114 |
gcacatgtaccaatcaagttggaaattctattattgtgtttgatatgagattacaagctgtagtatagccaaataaataaccaatttggcaaaaacaatt |
213 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| | || |||||| || |||||||||||||| | ||||||||| |
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|
| T |
17749744 |
gcacatgtaccaatcaacttggaaattctattattgtgtttgatctgagattacaagttctactatagctaagcaaataaccaatttgaccaaaacaatt |
17749645 |
T |
|
| Q |
214 |
aacatctataattaatactcatcacattaacac |
246 |
Q |
| |
|
|| || || ||||||||||||||| |||||| |
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|
| T |
17749644 |
aagat---tacttaatactcatcacactaacac |
17749615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 18761198 - 18761138
Alignment:
| Q |
159 |
tgagattacaagctgtagtatagccaaat-aaataaccaatttggcaaaaacaattaacat |
218 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| ||| || |||||||||| ||||||||| |
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|
| T |
18761198 |
tgagattacaagatgtagtatagccaaataaaacaactaagttggcaaaaaaaattaacat |
18761138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 25156840 - 25156898
Alignment:
| Q |
185 |
aataaataaccaatttggcaaaaacaattaacatctataattaatactcatcacattaacac |
246 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| || ||||||||||||||| |||||| |
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| T |
25156840 |
aataaataaccaatatggcaaaaacaattaacat---tacttaatactcatcacactaacac |
25156898 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 9560120 - 9560072
Alignment:
| Q |
161 |
agattacaagctgtagtatagccaaat-aaataaccaatttggcaaaaa |
208 |
Q |
| |
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|||||||||| |||||||||||||||| ||| ||||||||||||||||| |
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| T |
9560120 |
agattacaagttgtagtatagccaaataaaacaaccaatttggcaaaaa |
9560072 |
T |
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