View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21446_low_3 (Length: 254)
Name: NF21446_low_3
Description: NF21446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21446_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 67 - 236
Target Start/End: Original strand, 43143050 - 43143219
Alignment:
| Q |
67 |
ttgaaaagtattactaatgagaatgaacacataacaatgaaatgtgtgacctcatctatctaattggtaccttaatccaaccatttgcaaaagcaatgcc |
166 |
Q |
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| T |
43143050 |
ttgagaagtattactaatgagaatgaacacataacaatgaaatgtgtgacctcatctatctaattggtaccttaatccaaccatttgcaaaagcaatgcc |
43143149 |
T |
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| Q |
167 |
taagattacaaaaggagttgacataccaaataaaataatataaggaagtggcgtcatcattggattctct |
236 |
Q |
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| T |
43143150 |
taagattacaaaaggagttgacataccaaataaaataatataaggaagtggcgtcatcattggattctct |
43143219 |
T |
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Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 43142969 - 43143024
Alignment:
| Q |
12 |
ctggaattgaatattgctgacataatgtttgtaccgttacatatatgtgaaaaagt |
67 |
Q |
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| T |
43142969 |
ctggaattgaatattgctgacataatatttgtaccgttacatatatgtgaaaaagt |
43143024 |
T |
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