View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21446_low_4 (Length: 240)
Name: NF21446_low_4
Description: NF21446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21446_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 39085492 - 39085696
Alignment:
| Q |
18 |
aaggtatagcttggagattccttcagtagttgagacaaagatgatacaattcatgaaaaagtgggccatgttcaaacttcaaagcttattcgaccaaaaa |
117 |
Q |
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| T |
39085492 |
aaggtatagcttggagattccttcagtagttgagacaaagatgatacaattcatgaaaaagtgggccatgttcaaacttcaaagcttattcgaccaaaaa |
39085591 |
T |
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| Q |
118 |
caataaaaatgaagacactgtattgtttagaaaaatataaatcattcataacagaacgtgacatgcaaggatccagattccctgcattcgaatatacacg |
217 |
Q |
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| T |
39085592 |
caaaaaaaatgaaaacactgtattgtttagaaaaatataaatcattcataacagaacgtgacatgcaaggatccggattccctgcatttgaatatacacg |
39085691 |
T |
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| Q |
218 |
tattt |
222 |
Q |
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||||| |
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| T |
39085692 |
tattt |
39085696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 39081642 - 39081727
Alignment:
| Q |
22 |
tatagcttggagattccttcagtagttgagacaaagatgatacaattcatgaaaaagtgggccatgttcaaacttcaaagcttatt |
107 |
Q |
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| T |
39081642 |
tatagcttggagattccttcagtagttgagacaaagatgataccattcatagaaaagctggccatgttcaaacttcaaagcttatt |
39081727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 39081791 - 39081847
Alignment:
| Q |
125 |
aatgaagacactgtattgtttagaaaaatataaatcattcataacagaacgtgacat |
181 |
Q |
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| T |
39081791 |
aatgaagacactgtattatttagaaaaatataaatcatgcataacagaacgtgacat |
39081847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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