View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21447_high_12 (Length: 243)
Name: NF21447_high_12
Description: NF21447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21447_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 28 - 226
Target Start/End: Original strand, 35631194 - 35631392
Alignment:
| Q |
28 |
ttgtgccccattttattcattctatgcaacaaattcagctttataattttttaaacttgcagctatcctttttgtatccctactgtccaattcttcaaat |
127 |
Q |
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| T |
35631194 |
ttgtgccccattttattcattctatgcaacaaattcagctttataattttttaaacttgcagctatcctttttgtatccctactgtccaattcttcaaat |
35631293 |
T |
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| Q |
128 |
caaatcacagagaattcatttttatatctaaattcttgatatttaaactttttaatttgcaaggcttgacttagttttaaatttgaggaggggtgtttg |
226 |
Q |
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| T |
35631294 |
caaatcacagagaattcatttttatatctaaattcttgatatttaaactttttaatttgcaaggcttgacttagttttaaatttgaggaggggtgtttg |
35631392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 39 - 200
Target Start/End: Original strand, 16955941 - 16956103
Alignment:
| Q |
39 |
tttattcattctatgcaacaaattcagctttataattttttaaacttgcagctatcctttttgtatccctactgtccaattcttcaaatcaaatcacaga |
138 |
Q |
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| T |
16955941 |
tttattcattctatgcaacaaattcagatttttagttttttaaacttgcagctatcctttttgtataactgacgtccaatcctttaaatcaaatcacaga |
16956040 |
T |
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| Q |
139 |
gaattca-tttttatatctaaattcttgatatttaaactttttaatttgcaaggcttgactta |
200 |
Q |
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| T |
16956041 |
gaattcattttttatatctaaatttgagatgtttaaactttgtaatttgtaaggcttggctta |
16956103 |
T |
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