View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21447_high_13 (Length: 242)
Name: NF21447_high_13
Description: NF21447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21447_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 42518697 - 42518897
Alignment:
| Q |
21 |
gcaagattagtaaactacctaaataataaatcagttaaaatatatataacaatatgagtaattaacatttgtcaaaaaagaaaagagtagttaacaattt |
120 |
Q |
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| T |
42518697 |
gcaagattagtaaactacctaaataataaatcagttgaactatatataacaatatgagtaattaacatttgtcaaaaaagaaaagagtagttaacaattt |
42518796 |
T |
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| Q |
121 |
acgcacacaacttaatttcgtgacatattttattttaaacagtaaagtagtaccaaaaacataaaattgaggactaatttacccaaccagagactgttat |
220 |
Q |
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| T |
42518797 |
acgcacacaacttaatttcgtgacatattttattttaaacagtaaagtagtaccaaaaacataaaattgaggactaatttacccaaccagagactgttat |
42518896 |
T |
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| Q |
221 |
g |
221 |
Q |
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| |
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| T |
42518897 |
g |
42518897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 1240374 - 1240525
Alignment:
| Q |
21 |
gcaagattagtaaactacctaaataataaatcagttaaaatatatataacaatatgagtaattaacatttgtcaaaaaagaaaagagtagttaacaattt |
120 |
Q |
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|||| ||||||||||||| |||||||||||| |||| || |||| |||||| ||| |||||||||||||||||| | | ||| |||| |||||||||| |
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| T |
1240374 |
gcaacattagtaaactacttaaataataaataagttgaactataaataacagtataagtaattaacatttgtcacaca--caaaaagtacttaacaattt |
1240471 |
T |
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| Q |
121 |
acgcacacaacttaatttcgtgacatattttattttaaacagtaaagtagtacc |
174 |
Q |
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| T |
1240472 |
atgcacacagcttaatatcatgagatattttatttcaatcagtaaagtagtacc |
1240525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 41972006 - 41972157
Alignment:
| Q |
21 |
gcaagattagtaaactacctaaataataaatcagttaaaatatatataacaatatgagtaattaacatttgtcaaaaaagaaaagagtagttaacaattt |
120 |
Q |
| |
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|||| ||||||||||||| |||||||||||| |||| || ||| |||||| ||| |||||||||||||||||| | | ||| |||| |||||||||| |
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| T |
41972006 |
gcaacattagtaaactacttaaataataaataagttgaactattaataacagtataagtaattaacatttgtcacaca--caaaaagtacttaacaattt |
41972103 |
T |
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| Q |
121 |
acgcacacaacttaatttcgtgacatattttattttaaacagtaaagtagtacc |
174 |
Q |
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| |||||||||||||| || ||| ||||||||||| || ||||||||||||||| |
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| T |
41972104 |
atgcacacaacttaatatcatgagatattttatttcaatcagtaaagtagtacc |
41972157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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