View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21447_high_3 (Length: 355)

Name: NF21447_high_3
Description: NF21447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21447_high_3
NF21447_high_3
[»] chr8 (8 HSPs)
chr8 (1-182)||(32627442-32627623)
chr8 (247-355)||(32627687-32627795)
chr8 (247-341)||(32709625-32709719)
chr8 (267-338)||(32703931-32704002)
chr8 (3-180)||(32709025-32709202)
chr8 (7-166)||(7292554-7292713)
chr8 (6-163)||(7297588-7297745)
chr8 (250-338)||(7297849-7297937)
[»] chr4 (2 HSPs)
chr4 (3-157)||(5811069-5811223)
chr4 (247-353)||(5811332-5811438)
[»] chr6 (4 HSPs)
chr6 (1-167)||(21943175-21943341)
chr6 (3-182)||(20116529-20116708)
chr6 (247-353)||(20116018-20116124)
chr6 (247-338)||(21943547-21943638)
[»] chr3 (2 HSPs)
chr3 (16-172)||(27736355-27736511)
chr3 (247-341)||(27736651-27736745)
[»] chr5 (1 HSPs)
chr5 (12-173)||(8030369-8030530)


Alignment Details
Target: chr8 (Bit Score: 178; Significance: 6e-96; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 32627442 - 32627623
Alignment:
Q  1 ataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32627442 ataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattca 32627541  T
Q  101 aggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaataaccaatcaacaaaa 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32627542 aggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaatcaccaatcaacaaaa 32627623  T

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Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 247 - 355
Target Start/End: Original strand, 32627687 - 32627795
Alignment:
Q  247 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccataaaaggaaccaggaactcctgaga 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  32627687 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgaagaggaaaaattctaccatgaaaggaaccaggaactcctgaga 32627786  T
Q  347 agaagcatg 355  Q
    |||||||||    
T  32627787 agaagcatg 32627795  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 247 - 341
Target Start/End: Original strand, 32709625 - 32709719
Alignment:
Q  247 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccataaaaggaaccaggaactcc 341  Q
    ||||||||||||| |||   |||||| ||||||||||| ||||||||||||||||||  ||||||||| || ||||| || ||||||||||||||    
T  32709625 caaaccttagatagccacataaggctgtaagaggaatggacaaaatgcaaactttgattaggaaaaatcctgccatagaaagaaccaggaactcc 32709719  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 267 - 338
Target Start/End: Original strand, 32703931 - 32704002
Alignment:
Q  267 aaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccataaaaggaaccaggaac 338  Q
    ||||||||||||||||||||||||||||||||||| |  ||||||||| || ||||| |||||||| |||||    
T  32703931 aaggctataagaggaatgaacaaaatgcaaacttttattaggaaaaatcctgccatagaaggaaccgggaac 32704002  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 180
Target Start/End: Original strand, 32709025 - 32709202
Alignment:
Q  3 aatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattcaag 102  Q
    |||||||| ||| |||||||||| ||| |  ||||||||||||||||||||||| |||||  |||| ||||| |||||||| ||  | |  |||||  ||    
T  32709025 aatcatgcgaccaccttcaactacttcctttgcacgacacttgagaaaaagagaaaaatcactttgaaattggttgtagtacgcagtaagtacatttgag 32709124  T
Q  103 gggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaataaccaatcaacaa 180  Q
    |||||||| |  |  || |||||||||||||| |||||||   ||  ||| ||||||||| |||| ||||||||||||    
T  32709125 gggcttgtacgagccatgtaaatgttgcccttattgttgttcacattctccggaacctaaataatcaccaatcaacaa 32709202  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 166
Target Start/End: Original strand, 7292554 - 7292713
Alignment:
Q  7 atgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattcaaggggc 106  Q
    |||| |||||||||||| | ||| |  || ||||||||||||||||  || || ||| |||| ||||||| |||||||||||||||||||||  |||| |    
T  7292554 atgcgacccccttcaaccaattcctttgcgcgacacttgagaaaaatcgacaagtctctttgaaattgctcgtagtaagccttgacgacatttgagggac 7292653  T
Q  107 ttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaa 166  Q
    |||||  |   || |||||||| ||||| ||||| |||  ||| || |||||||||||||    
T  7292654 ttgtgtcgctgatgtaaatgttacccttattgttatctataccttcgggaacctaattaa 7292713  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 7297588 - 7297745
Alignment:
Q  6 catgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattcaagggg 105  Q
    |||||||||||||||||||| ||| || |||||||||||||||||||  ||||| ||| |||  ||||| |  ||||| || ||||| |||||  ||||     
T  7297588 catgcaacccccttcaactagttcctctgcacgacacttgagaaaaaccgagaagtctcttttaaattgatcatagtatgctttgacaacatttgaggga 7297687  T
Q  106 cttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaat 163  Q
    ||||||  |   || |||||||||| ||| ||||| |||  |||||| ||||||||||    
T  7297688 cttgtgtagttgatgtaaatgttgctcttattgttctctataccctccggaacctaat 7297745  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 7297849 - 7297937
Alignment:
Q  250 accttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccataaaaggaaccaggaac 338  Q
    ||||| |||| ||| |||||||| | |||||||||||  ||||| |||||| ||  |||||||| ||||| ||| || |||||||||||    
T  7297849 acctttgatagccactgaaggctgtgagaggaatgaatgaaatgtaaacttcgattaggaaaaactctactatagaaagaaccaggaac 7297937  T

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Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 3 - 157
Target Start/End: Original strand, 5811069 - 5811223
Alignment:
Q  3 aatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattcaag 102  Q
    |||||||  ||| |||||||||| |||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||  ||||||  ||    
T  5811069 aatcatgtgaccaccttcaactagttcttcggcacgacacttgagaaaaaaagagaaatctgtttgaaattgcttgtagtaagccttgtggacatttgag 5811168  T
Q  103 gggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaa 157  Q
    ||||||||||| |  |  |||||||||||||||||||||||| || |||||||||    
T  5811169 gggcttgtgctcgtcaggtaaatgttgcccttgttgttgtctccaacctcaggaa 5811223  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 353
Target Start/End: Original strand, 5811332 - 5811438
Alignment:
Q  247 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccataaaaggaaccaggaactcctgaga 346  Q
    ||||||||||||||||| ||||| || ||||| ||||| |||||||||||||||| |   ||||| || |||| ||||||||| |||||||| || ||||    
T  5811332 caaaccttagataaccattgaagactgtaagaagaatgcacaaaatgcaaacttttatctggaaagatcctactataaaaggatccaggaacaccagaga 5811431  T
Q  347 agaagca 353  Q
    || ||||    
T  5811432 agtagca 5811438  T

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Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 21943175 - 21943341
Alignment:
Q  1 ataatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattca 100  Q
    |||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||| |||||| | || |||||||  ||||||||||||| ||||||      
T  21943175 ataaccatgcaacccccttcaactagttcttgggcacgacactttagaaaaagagataaatctctatgaaattgctcatagtaagccttgaagacatttg 21943274  T
Q  101 aggggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaat 167  Q
    ||||||||||| | |  |  |||||||||||||| ||||||||| |||||| ||| ||||| |||||    
T  21943275 aggggcttgtggtcgccaagtaaatgttgcccttattgttgtctacacccttagggacctatttaat 21943341  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 182
Target Start/End: Complemental strand, 20116708 - 20116529
Alignment:
Q  3 aatcatgcaacccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattcaag 102  Q
    |||||||||||| |||||||| | ||||| |||||||||||||||||||||||||||||| ||  | ||||| |  || || ||||||| ||||||  |     
T  20116708 aatcatgcaacctccttcaaccaattctttggcacgacacttgagaaaaagagagaaatcaatacgaaattgttcataatatgccttgaagacatttgat 20116609  T
Q  103 gggcttgtgctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaataaccaatcaacaaaa 182  Q
    ||||||||| | | ||| ||||| ||||||||||||||||   |||| |  |||||||||||||| ||| ||| ||||||    
T  20116608 gggcttgtgttcgctatgtaaatattgcccttgttgttgttcacaccattgggaacctaattaatcaccgatcgacaaaa 20116529  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 353
Target Start/End: Complemental strand, 20116124 - 20116018
Alignment:
Q  247 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccataaaaggaaccaggaactcctgaga 346  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||| ||||| | |  ||| |||||||| |||||||||||||| ||||| || ||||    
T  20116124 caaaccttagataaccaatgaatgctatatgaggaatgaactaaatgtaaactctcattagggaaaattctgccataaaaggaaccgggaacaccagaga 20116025  T
Q  347 agaagca 353  Q
    || ||||    
T  20116024 agtagca 20116018  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 21943547 - 21943638
Alignment:
Q  247 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccataaaaggaaccaggaac 338  Q
    ||||||||||| | ||||||||| ||  |||||| ||||| |||||||||||||||   |||||||||||| |||||||||||||| |||||    
T  21943547 caaaccttagagagccaatgaagactgcaagaggcatgaataaaatgcaaactttggtaaggaaaaattctgccataaaaggaaccgggaac 21943638  T

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Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 172
Target Start/End: Original strand, 27736355 - 27736511
Alignment:
Q  16 ccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattcaaggggcttgtgctgg 115  Q
    |||||||||| ||||| |||||||||    ||||||| |||||||||| || | |||||||||||||||||||||| ||| ||  ||||||||||||| |    
T  27736355 ccttcaactaattctttggcacgacatcgaagaaaaaaagagaaatctgttcgaaattgcttgtagtaagccttgatgacgtttgaggggcttgtgctcg 27736454  T
Q  116 atatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaataacca 172  Q
      |  |||||||| |||||||||||||| |||||||| |||||||||| ||| ||||    
T  27736455 tcaggtaaatgtttcccttgttgttgtcagcaccctctggaacctaatgaatcacca 27736511  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 341
Target Start/End: Original strand, 27736651 - 27736745
Alignment:
Q  247 caaaccttagataaccaatgaaggctataagaggaatgaacaaaatgcaaactttgacgaggaaaaattctaccataaaaggaaccaggaactcc 341  Q
    ||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||| | |   ||||||||||| |||||||| ||||||||||||||    
T  27736651 caaaccttagatagccattgaagactatacgaggaatgaacaaaatgcaaactattatctggaaaaattctgccataaaatgaaccaggaactcc 27736745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 8030530 - 8030369
Alignment:
Q  12 acccccttcaactatttcttcggcacgacacttgagaaaaagagagaaatctatttggaattgcttgtagtaagccttgacgacattcaaggggcttgtg 111  Q
    |||||| ||||| | |||||| ||||||||||||||||| |  ||||||||| |||| |||||||  | |||||| ||||  || ||   ||||||||||    
T  8030530 acccccgtcaacaagttcttctgcacgacacttgagaaacaatgagaaatctctttgaaattgctcatggtaagcgttgagcacgtttgcggggcttgtg 8030431  T
Q  112 ctggatatataaatgttgcccttgttgttgtctgcaccctcaggaacctaattaataaccaa 173  Q
     | |  || |||||||| ||||| || || ||| |||| | |||||||||| |||| |||||    
T  8030430 gtagccatgtaaatgttacccttattattctctacacctttaggaacctaagtaatcaccaa 8030369  T

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