View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21447_high_6 (Length: 292)
Name: NF21447_high_6
Description: NF21447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21447_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 40443975 - 40443710
Alignment:
| Q |
7 |
aagaaaatggttgtgatggtggcaataatcagattttccctacagtggttgaaatgaaagagatcaatatagtttagtttgatgttgcattgtatttaat |
106 |
Q |
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| T |
40443975 |
aagaacatggttgtgatggtggcaataatcagattttccctacagtggttgaaatgaaagagatcaatatagtttagtttgatgttgcattgtatttaat |
40443876 |
T |
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| Q |
107 |
aggcttaattaatctctatctagttattatgttatattggtattaatagggactattgtcatactttgactaattatcactacagttctagttcaagttt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40443875 |
aggcttaattaatctctatctagttattatgttatattggtattaatagggactattgtcatactttgactaattatcactacagttctagttcaagttt |
40443776 |
T |
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| Q |
207 |
gtttctgttaatcaaacattttgtcaagtttttatgtagcaaataaatatattattctaacacatt |
272 |
Q |
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| T |
40443775 |
gtctctgttaatcaaacattttgtcaagtttttatgtagcaaataaatatattattcgaacacatt |
40443710 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 1517821 - 1517861
Alignment:
| Q |
232 |
aagtttttatgtagcaaataaatatattattctaacacatt |
272 |
Q |
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| T |
1517821 |
aagtttttatatagcaaatatttatattattctaacacatt |
1517861 |
T |
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