View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21447_high_9 (Length: 270)
Name: NF21447_high_9
Description: NF21447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21447_high_9 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 52712813 - 52712559
Alignment:
| Q |
16 |
aatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaaga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712813 |
aatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaaga |
52712714 |
T |
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| Q |
116 |
aacctagtaaaagggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataaaaccgtagttattgtgggaattc |
215 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52712713 |
aacctagtaaaagggcttcccattggcttttggaaacggtaataccgaacaccggcagctagaacaacgatagataaaaccgtagttattgtgggaattc |
52712614 |
T |
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| Q |
216 |
caaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattcc |
270 |
Q |
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| T |
52712613 |
caaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattcc |
52712559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 52721634 - 52721380
Alignment:
| Q |
16 |
aatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaaga |
115 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
52721634 |
aatatcagagtgtgtggtctcaacctcatagagagtaggttcattttctacggaaactccttttcgatgtttcttgacggaggctacaataacctgaaga |
52721535 |
T |
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| Q |
116 |
aacctagtaaaagggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataaaaccgtagttattgtgggaattc |
215 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||| ||| |||||||||||| ||||||||||||| |||| |
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| T |
52721534 |
aacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtgggtattc |
52721435 |
T |
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| Q |
216 |
caaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattcc |
270 |
Q |
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| T |
52721434 |
caaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattcc |
52721380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 52698994 - 52698774
Alignment:
| Q |
16 |
aatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaaga |
115 |
Q |
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||||||||||| |||||| |||||||| ||||||| || ||||||||||| |||||||||| | |||||||||| | || |||||||||||||||||| |
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| T |
52698994 |
aatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaaga |
52698895 |
T |
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| Q |
116 |
aacctagtaaaagggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataaaaccgtagttattgtgggaattc |
215 |
Q |
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|||||||| || ||||||||||||| ||||| ||||| |||||| ||| ||| | || | | ||| ||||||| || ||||||||||||||| | | |
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| T |
52698894 |
aacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatg |
52698795 |
T |
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| Q |
216 |
caaaaccccaaccccacccta |
236 |
Q |
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|||||||||||| |||||||| |
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| T |
52698794 |
caaaaccccaactccacccta |
52698774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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