View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21447_low_2 (Length: 529)
Name: NF21447_low_2
Description: NF21447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21447_low_2 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Complemental strand, 31104945 - 31104417
Alignment:
| Q |
1 |
taggtcattgagatttatgataggtagatagatacatcatctatctattttggaatttgatttgggtggatgagaatttgattgatgaatttccatgtta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31104945 |
taggtcattgagatttatgataggtagatagatacatcatctatctattttggaatttgatttgggtggatgagaatttgattgatgaatttccatgtta |
31104846 |
T |
|
| Q |
101 |
taaatctcttttgggatttgtaaaccaattttatttgaagatggcaacaagtagaagaggtggaatttcatttgtcaaatcaaaaaggagggaaggattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31104845 |
taaatctcttttgggatttgtaaaccaattttatttgaagatggcaacaagtagaagaggtggaatttcatttgtcaaatcaaaaaggagggaaggattc |
31104746 |
T |
|
| Q |
201 |
actgagaatctcacatttgtagcttgtgagtggtttttgatattcctattgctagtggattcattgctatcatatcttgtcaaaaagtttgcaagttatt |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31104745 |
actgagaatctcacatttgtggcttgtgagtggtttttgatattcctattgctagttgattcattgctatcatatcttgtcaaaaagtttgcaagttatt |
31104646 |
T |
|
| Q |
301 |
gcaagttgcaattgccttgtttgttatgttctaggcttgatcatatcttagatgttgaaaagccagagttttatcatagcctactttgcagcgatcacaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31104645 |
gcaagttgcaattgccttgtttgttatgttctaggcttgatcatatcttagatggcgaaaagccagagttttatcatagcctactttgcagcgatcacaa |
31104546 |
T |
|
| Q |
401 |
atcagaagtatcgtcgatgatgttatgtcatactcatggtaaacttgcggacggtcataggatgtgcgatgattgtcttttgtcactcactaagaatggt |
500 |
Q |
| |
|
||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31104545 |
atcagaaatatcgtcaatgatgttgtgtcatactcatggtaaacttgcggacggtcataggatgtgcgatgattgtcttttgtcactcactaagaatggt |
31104446 |
T |
|
| Q |
501 |
aagcgcaacacgaaaactcataggttgtt |
529 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31104445 |
aagcgcaacacgaaaactcataggttgtt |
31104417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University