View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21447_low_4 (Length: 337)
Name: NF21447_low_4
Description: NF21447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21447_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 32254786 - 32255107
Alignment:
| Q |
1 |
cgaagatgaactacttaaatctatcaataattgtcagcatattaggttcaaaattgagggggaagtctcctatgaattcagcaaagcggcttttgttctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |||| |||||||||| |
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| T |
32254786 |
cgaagatgaactacttaaatctatcaataattgtctgcatattgggttcaaaattgaggtagaagtctcctatgaattcagcaaggcgggttttgttctt |
32254885 |
T |
|
| Q |
101 |
tggggccgtgaggtcacacaattgttaggtatttctgttgctcaactacgcatcaacatgattcaggtacccttattggacaagatagttgttaattata |
200 |
Q |
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|||| ||||||||||||| | |||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32254886 |
tgggaccgtgaggtcacatagttgttaggtatttctgctgctcaactatgcttcaacatgattcaggtacccttattggacaagatagttgttaattata |
32254985 |
T |
|
| Q |
201 |
tttatctgttatatggttttcacattttcatatacaaatactatccatttgttggtcagtta-ttttgtgttaaagttttatcattttatgttaggttgg |
299 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32254986 |
tttatctgttgtatggttttcacattttcatatacaaatattatacatctgttggtcagttatttttgtgttaaagttttatcattttatgttaggttgg |
32255085 |
T |
|
| Q |
300 |
tatcaccaatcgtttggaatat |
321 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
32255086 |
tatcgccaatcgtttggaatat |
32255107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 22079740 - 22079663
Alignment:
| Q |
91 |
ttttgttctttggggccgtgaggtcacacaattgttaggtatttctgttgctcaactacgcatcaacatgattcaggt |
168 |
Q |
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||||||| |||||| |||||||||||||||| ||||||| || |||| |||||| |||||| |||||||||||||| |
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| T |
22079740 |
ttttgttgtttgggaccgtgaggtcacacaaatgttagggatatctgctgctcagctacgctcaaacatgattcaggt |
22079663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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