View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21447_low_9 (Length: 273)
Name: NF21447_low_9
Description: NF21447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21447_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 52712078 - 52712198
Alignment:
| Q |
19 |
aggacaaaattcaaacaatgattccaactaagctaactgatcatacaaggattgtaaccactttaacaattttcaactaattctagcagaggatagactg |
118 |
Q |
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| T |
52712078 |
aggacaaaattcaaacaatgattccaactaagctaactgatcatacaaggattgtaaccactttaacaattttcaactaattctagcagaggatggactg |
52712177 |
T |
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| Q |
119 |
cattaaattgacagagttcag |
139 |
Q |
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||||||||||||||||||||| |
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| T |
52712178 |
cattaaattgacagagttcag |
52712198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 52720898 - 52721014
Alignment:
| Q |
19 |
aggacaaaattcaaacaatgattccaactaagctaactgatcatacaaggattgtaaccactttaacaattttcaactaattctagcagaggatagactg |
118 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
52720898 |
aggacaaaattcaaacaatgattctaactaagctaactgatcatacaaggattgtaaccactttaacaattttcaactaattctagcagaggatggtctg |
52720997 |
T |
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| Q |
119 |
cattaaattgacagagt |
135 |
Q |
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||||| |||||||||| |
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| T |
52720998 |
cattagcttgacagagt |
52721014 |
T |
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