View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21448_low_16 (Length: 226)

Name: NF21448_low_16
Description: NF21448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21448_low_16
NF21448_low_16
[»] chr3 (6 HSPs)
chr3 (8-226)||(28917620-28917838)
chr3 (92-226)||(28903928-28904062)
chr3 (122-182)||(28893991-28894051)
chr3 (14-72)||(28893873-28893931)
chr3 (118-188)||(28927051-28927121)
chr3 (14-86)||(28903817-28903887)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 28917620 - 28917838
Alignment:
Q  8 gacatcatcaggattcaggatatgcgggttcaaacagtatattgagtgttcaaaagcaaaactcgggcaagagcatattttccgggaaatgtaattgaat 107  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28917620 gacataatcaggattcaggatatgcaggttcaaacagtatattgagtgttcaaaagcaaaactcgggcaagagcatattttccgggaaatgtaattgaat 28917719  T
Q  108 gctctatgccaaaggcaaaaataaacggtgaagcagcttaccacaacaccacctattatcattcgtcaaaaaggaggcatcttgtttcacacattccgcg 207  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28917720 gctctatagcaaaggcaaaaataaacggtgaagcagcttaccacaacaccacctattgtcattcgtcaaaaaggaggcatcttgtttcacacattccgcg 28917819  T
Q  208 tgataggctttaaagcaat 226  Q
    |||||||||||||||||||    
T  28917820 tgataggctttaaagcaat 28917838  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 28903928 - 28904062
Alignment:
Q  92 ggaaatgtaattgaatgctctatgccaaaggcaaaaataaacggtgaagcagcttaccacaacaccacctattatcattcgtcaaaaaggaggcatcttg 191  Q
    |||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||| ||||||||    
T  28903928 ggaaatgtaattgaatgccctataataaaggcaaaaataaacggtgaagcagcttaccacaacaccacctatcgtcattcttcaaaaaggaagcatcttg 28904027  T
Q  192 tttcacacattccgcgtgataggctttaaagcaat 226  Q
    ||| |||||||| || ||||||| ||||| |||||    
T  28904028 ttttacacattcagcatgataggttttaaggcaat 28904062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 28893991 - 28894051
Alignment:
Q  122 gcaaaaataaacggtgaagcagcttaccacaacaccacctattatcattcgtcaaaaagga 182  Q
    |||||| |||||||||||||| |||||||||||||||  ||| |||||| |||||||||||    
T  28893991 gcaaaagtaaacggtgaagcaacttaccacaacaccaattatcatcatttgtcaaaaagga 28894051  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 28893873 - 28893931
Alignment:
Q  14 atcaggattcaggatatgcgggttcaaacagtatattgagtgttcaaaagcaaaactcg 72  Q
    ||||||||||||||||||| |||||||| | ||||  || |||||||||||||||||||    
T  28893873 atcaggattcaggatatgcaggttcaaataatatacagaatgttcaaaagcaaaactcg 28893931  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 28927051 - 28927121
Alignment:
Q  118 aaaggcaaaaataaacggtgaagcagcttaccacaacaccacctattatcattcgtcaaaaaggaggcatc 188  Q
    ||||||||||||||| | |||||||||||||||||||||||  |||| ||||||  || |||||| |||||    
T  28927051 aaaggcaaaaataaaagatgaagcagcttaccacaacaccaattattgtcattctccataaaggaagcatc 28927121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 28903817 - 28903887
Alignment:
Q  14 atcaggattcaggatatgcgggttcaaacagtatattgagtgttcaaaagcaaaactcgggcaagagcatatt 86  Q
    ||||||||||||||||||| ||||||||||  |||| | |||||   ||||||||||||||||||| ||||||    
T  28903817 atcaggattcaggatatgcaggttcaaaca--atatagtgtgtttggaagcaaaactcgggcaagaacatatt 28903887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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