View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21448_low_2 (Length: 491)

Name: NF21448_low_2
Description: NF21448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21448_low_2
NF21448_low_2
[»] chr4 (4 HSPs)
chr4 (14-379)||(21386813-21387177)
chr4 (127-308)||(41231454-41231642)
chr4 (422-475)||(21386746-21386799)
chr4 (270-308)||(33283655-33283694)
[»] chr1 (3 HSPs)
chr1 (118-292)||(33383527-33383703)
chr1 (216-291)||(38544446-38544522)
chr1 (14-48)||(27905515-27905549)
[»] chr6 (4 HSPs)
chr6 (233-308)||(20500245-20500321)
chr6 (190-292)||(32150325-32150428)
chr6 (217-291)||(33968327-33968402)
chr6 (274-310)||(34101522-34101558)
[»] chr7 (7 HSPs)
chr7 (18-308)||(26385869-26386144)
chr7 (273-308)||(2331795-2331830)
chr7 (273-308)||(2339328-2339363)
chr7 (266-313)||(33719292-33719339)
chr7 (217-271)||(28534240-28534294)
chr7 (220-301)||(40292728-40292810)
chr7 (216-284)||(22567828-22567896)
[»] chr2 (6 HSPs)
chr2 (58-152)||(30966986-30967077)
chr2 (217-292)||(20572349-20572425)
chr2 (146-259)||(30598841-30598954)
chr2 (254-308)||(4472256-4472312)
chr2 (217-308)||(16952056-16952149)
chr2 (217-308)||(17022721-17022814)
[»] chr5 (1 HSPs)
chr5 (217-301)||(17853752-17853837)
[»] scaffold1613 (1 HSPs)
scaffold1613 (216-291)||(725-801)
[»] chr8 (3 HSPs)
chr8 (217-308)||(1760924-1761016)
chr8 (217-300)||(25184841-25184925)
chr8 (221-276)||(15906989-15907044)
[»] chr3 (5 HSPs)
chr3 (220-300)||(823117-823199)
chr3 (216-259)||(16266029-16266072)
chr3 (217-291)||(45354638-45354713)
chr3 (13-41)||(7104950-7104978)
chr3 (237-308)||(13018000-13018072)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 379
Target Start/End: Complemental strand, 21387177 - 21386813
Alignment:
Q  14 aggttgagaggtggtggaagctgtatgagtattagaatgggccctttttgggtgtggctcagctatggtgatgcgaccaaggtgttttgatttcaagggg 113  Q
    ||||||||| ||| |||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  21387177 aggttgagatgtgatggaagttgtatgaatattagaatgtgccctttttgggtgtggctcagctatggtgatgcgaccagggtgttttgatttaaagggg 21387078  T
Q  114 tatattttttgggggtgagtagtagcgatgggtggttatggatatcatgttcaatggtggttcgcggtggagtatgatttaggaggtgaagtttatttga 213  Q
    | | ||||||||||||||||||| |||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||||||||     
T  21387077 tgtgttttttgggggtgagtagtggcgatgggtggttatggatatcatattcagcggtggttcgcggtggagtatgatttaggaggtgaactttatttgg 21386978  T
Q  214 tcatgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtgtttttatggtgtttattttggatgttccgtctatattcagc 313  Q
    |  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21386977 tggtgttgtcctcatgggcgttgaaggtagggttttgtttggtgttgtgtgtatgagtgtttttatggtgtttattttggatgttccgtctatattcagc 21386878  T
Q  314 tccttatgccctagnnnnnnnngttgaatttatattcaaactcaaagtatgtatcaagatttatat 379  Q
    ||||||||||||||         ||||||||||||||||||||||| |||||||||||||||||||    
T  21386877 tccttatgccctagtttttttttttgaatttatattcaaactcaaa-tatgtatcaagatttatat 21386813  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 127 - 308
Target Start/End: Complemental strand, 41231642 - 41231454
Alignment:
Q  127 ggtgagtagtagcgatgggtggttatggatatcatgttcaatggtggttcgcggtggagtatgatttaggaggtgaagtttatttgatcatgttgtcctc 226  Q
    |||||||||| |||||||||||||||||| ||||| || | |||| ||| ||| |||||| || |||||||||||||| ||||||| |  ||||||||||    
T  41231642 ggtgagtagtggcgatgggtggttatgga-atcatttttagtggtagtttgcgatggagtctgttttaggaggtgaagattatttggtggtgttgtcctc 41231544  T
Q  227 atgggcgttgaaggtagggtttggtttggtgttgtgtgta--------tgagtgtttttatggtgtttattttggatgttccgtctatat 308  Q
    ||||| ||| ||||||||| |||||| ||||||| |||||        || |||||||||||||||||||||||||||||||||||||||    
T  41231543 atgggtgttaaaggtagggcttggttaggtgttgggtgtatgggtgtgtgggtgtttttatggtgtttattttggatgttccgtctatat 41231454  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 422 - 475
Target Start/End: Complemental strand, 21386799 - 21386746
Alignment:
Q  422 tatgatataagaggataagagataggtgcagacacacacttgtacatttgtaag 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21386799 tatgatataagaggataagagataggtgcagacacacacttgtacatttgtaag 21386746  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 33283694 - 33283655
Alignment:
Q  270 gtgtttttat-ggtgtttattttggatgttccgtctatat 308  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  33283694 gtgtttttatcggtgtttattttggatgttccgtctatat 33283655  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 292
Target Start/End: Complemental strand, 33383703 - 33383527
Alignment:
Q  118 ttttttgggggtgagtagtagcgatgggtggttatggatatcatgttcaatggtggttcgcggtggagtatgatttaggaggtgaagtttattt--gatc 215  Q
    |||||| |||||||||||| ||||||||||||||||||| || | | ||||||||||| |||   |||| ||||||  | |||||  |||||||  |       
T  33383703 tttttttggggtgagtagtggcgatgggtggttatggat-tcgtttccaatggtggtttgcgaaagagtctgattttagtggtgagatttattttggtgg 33383605  T
Q  216 atgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtgt-ttttatggtgtttattttg 292  Q
     ||||||| ||||||| |||||| | || | |||||| |||||||||||||||||||| |||||||||||||||||||    
T  33383604 ttgttgtcgtcatgggtgttgaaagcagagcttggttaggtgttgtgtgtatgagtgtcttttatggtgtttattttg 33383527  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 38544522 - 38544446
Alignment:
Q  216 atgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtgt-ttttatggtgtttatttt 291  Q
    |||||||||||||||| |||||||||| | ||||| | ||||||||||||| |  ||| ||||||||||||||||||    
T  38544522 atgttgtcctcatgggtgttgaaggtacgatttggctaggtgttgtgtgtagggatgtcttttatggtgtttatttt 38544446  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 27905515 - 27905549
Alignment:
Q  14 aggttgagaggtggtggaagctgtatgagtattag 48  Q
    ||||||||||||||||||||||||||||| |||||    
T  27905515 aggttgagaggtggtggaagctgtatgagcattag 27905549  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 20500245 - 20500321
Alignment:
Q  233 gttgaaggtagggtttggtttggtgttgtgtgtatgagtgt-ttttatggtgtttattttggatgttccgtctatat 308  Q
    |||||||||||||||||||| |||| | || |||||||||| |||||||||||||||||||| ||||||| ||||||    
T  20500245 gttgaaggtagggtttggttaggtggtttgcgtatgagtgtcttttatggtgtttattttgggtgttccgcctatat 20500321  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 190 - 292
Target Start/End: Original strand, 32150325 - 32150428
Alignment:
Q  190 atttaggaggtgaagtttatttgatcatgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtgttttt-atggtgtttat 288  Q
    ||||||||| |||| ||||||||||  ||||||| || |||  ||||||||||||| || |||  ||||||||||||||  ||||||| ||||| |||||    
T  32150325 atttaggagttgaaatttatttgatggtgttgtcttcgtggatgttgaaggtagggcttagttatgtgttgtgtgtatggatgtttttcatggtttttat 32150424  T
Q  289 tttg 292  Q
    ||||    
T  32150425 tttg 32150428  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 33968402 - 33968327
Alignment:
Q  217 tgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtgt-ttttatggtgtttatttt 291  Q
    ||||||||||| ||| |||||||||||||||||| | |||| |||||||| | |||| |||||  |||||||||||    
T  33968402 tgttgtcctcaagggtgttgaaggtagggtttggctaggtgatgtgtgtaggggtgtcttttacagtgtttatttt 33968327  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 310
Target Start/End: Original strand, 34101522 - 34101558
Alignment:
Q  274 ttttatggtgtttattttggatgttccgtctatattc 310  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  34101522 ttttatggtgtttattttgggtgttccgcctatattc 34101558  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 26386144 - 26385869
Alignment:
Q  18 tgagaggtggtggaagctgtatgagtattagaatgggcccttttt-gggtgtggctcagctatggtgatgcgaccaaggtgttttgatttcaaggggtat 116  Q
    ||||||||||||||| |||  |||||||||| || || ||||||| ||||||| ||||||||||| |||||   |||| ||||| |||||  |||||| |    
T  26386144 tgagaggtggtggaaactgactgagtattagtataggaccttttttgggtgtgactcagctatggagatgcatacaagttgttt-gatttagaggggtgt 26386046  T
Q  117 attttttgggggtgagtagtagcgatgggtggttatggatatcatgttcaatggtggttcgcggtggagtatgatttaggaggtgaagtttatttgatca 216  Q
     || |   | |||||||||| |||||| ||||||||||||||||| ||||  ||| ||||  | | ||||  | ||||||||| |||  ||||||| |      
T  26386045 tttgt---gaggtgagtagtggcgatgagtggttatggatatcattttcagcggtagttcatgattgagttcg-tttaggaggggaaacttatttggtgg 26385950  T
Q  217 tgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtg-tttttatggtgtttattttggatgttccgtctatat 308  Q
    |||| |||||||||| ||||||||||||||| |||            ||||||||| ||||||||||||||||||||| ||||||| ||||||    
T  26385949 tgttttcctcatgggtgttgaaggtagggttgggt------------gtatgagtgatttttatggtgtttattttgggtgttccgcctatat 26385869  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 308
Target Start/End: Complemental strand, 2331830 - 2331795
Alignment:
Q  273 tttttatggtgtttattttggatgttccgtctatat 308  Q
    ||||||||||||||||||||||||||||||||||||    
T  2331830 tttttatggtgtttattttggatgttccgtctatat 2331795  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 308
Target Start/End: Complemental strand, 2339363 - 2339328
Alignment:
Q  273 tttttatggtgtttattttggatgttccgtctatat 308  Q
    ||||||||||||||||||||||||||||||||||||    
T  2339363 tttttatggtgtttattttggatgttccgtctatat 2339328  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 313
Target Start/End: Original strand, 33719292 - 33719339
Alignment:
Q  266 atgagtgtttttatggtgtttattttggatgttccgtctatattcagc 313  Q
    ||||||||||||| |||||||| ||| ||||||||| |||||||||||    
T  33719292 atgagtgtttttagggtgtttactttcgatgttccgcctatattcagc 33719339  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 28534294 - 28534240
Alignment:
Q  217 tgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagt 271  Q
    ||||||||||| ||| |||||||||||||||||| | | ||||||||||| ||||    
T  28534294 tgttgtcctcaggggtgttgaaggtagggtttggctagttgttgtgtgtaggagt 28534240  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 40292810 - 40292728
Alignment:
Q  220 tgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtgt-ttttatggtgtttattttggatgttccg 301  Q
    ||||||| |||| ||||||| ||||||||| || || || ||||||| |||| | ||||||||| |||| |||||||||||||    
T  40292810 tgtcctcgtgggtgttgaagatagggtttgattaggggtcgtgtgtaagagtatcttttatggtttttactttggatgttccg 40292728  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 22567896 - 22567828
Alignment:
Q  216 atgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtgtttttatggtgt 284  Q
    |||||||||  | ||| |||||||||||||||||  | ||||||||||||| |  ||||||||||||||    
T  22567896 atgttgtccctaggggtgttgaaggtagggtttgactaggtgttgtgtgtagggctgtttttatggtgt 22567828  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 30967077 - 30966986
Alignment:
Q  58 tttttgggtgtggctcagctatggtgatgcgaccaaggtgttttgatttcaaggggtatattttttgggggtgagtagtagcgatgggtggttat 152  Q
    ||||||||||| ||||||||||||||||| || || ||||||| |||||  ||||||   |||||||||  ||||||||||||||||||||||||    
T  30967077 tttttgggtgtcgctcagctatggtgatgagaacatggtgttt-gatttagaggggtgatttttttggg--tgagtagtagcgatgggtggttat 30966986  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 292
Target Start/End: Original strand, 20572349 - 20572425
Alignment:
Q  217 tgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtgt-ttttatggtgtttattttg 292  Q
    ||||||||||||||| |||||||||||||| ||  |  |||||||||||| | |||| |||||||||||||||||||    
T  20572349 tgttgtcctcatgggtgttgaaggtagggtatgagtaagtgttgtgtgtaggggtgtcttttatggtgtttattttg 20572425  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 259
Target Start/End: Complemental strand, 30598954 - 30598841
Alignment:
Q  146 tggttatggatatcatgttcaatggtggttcgcggtggagtatgatttaggaggtgaagtttatttgatcatgttgtcctcatgggcgttgaaggtaggg 245  Q
    |||||||||||||||  ||||  ||| ||| ||| ||| || |||||||| |||||||||||||||| |   |||||||||| ||| ||| || ||||||    
T  30598954 tggttatggatatcactttcagcggtagtttgcgatggtgtctgatttagaaggtgaagtttatttggtggggttgtcctcaagggtgttaaaagtaggg 30598855  T
Q  246 tttggtttggtgtt 259  Q
     |||||| ||||||    
T  30598854 attggttaggtgtt 30598841  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 4472256 - 4472312
Alignment:
Q  254 ggtgttgtgtgtatgagtg-tttttatggtgtttatttt-ggatgttccgtctatat 308  Q
    ||||||||||||| | ||| ||||||||||||||||||| |||||||||||||||||    
T  4472256 ggtgttgtgtgtaggggtgatttttatggtgtttattttcggatgttccgtctatat 4472312  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 308
Target Start/End: Complemental strand, 16952149 - 16952056
Alignment:
Q  217 tgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtgt-ttttatggtgttta-ttttggatgttccgtctatat 308  Q
    ||||||| ||||||| ||||||||||||   ||  | ||||||||||||| |||||| ||||||| |||||| |||||||||||| | ||||||    
T  16952149 tgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgtcttttatgatgtttatttttggatgttctgcctatat 16952056  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 308
Target Start/End: Complemental strand, 17022814 - 17022721
Alignment:
Q  217 tgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtgt-ttttatggtgttta-ttttggatgttccgtctatat 308  Q
    ||||||| ||||||| ||||||||||||   ||  | ||||||||||||| |||||| ||||||| |||||| |||||||||||| | ||||||    
T  17022814 tgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgtcttttatgatgtttatttttggatgttctgcctatat 17022721  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 17853837 - 17853752
Alignment:
Q  217 tgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtg-tttttatggtgtttattttggatgttccg 301  Q
    |||| |||||||||| | |||||||||||||||| | ||||||||| |||||  || |||||||||||||||||| || |||||||    
T  17853837 tgttttcctcatgggtggtgaaggtagggtttggctaggtgttgtgagtatggatgttttttatggtgtttatttcgggtgttccg 17853752  T

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Target: scaffold1613 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 801 - 725
Alignment:
Q  216 atgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtgt-ttttatggtgtttatttt 291  Q
    |||||||||||||||| |||||||||| | ||||| | ||||||||||||| |  ||| ||||||||||||||||||    
T  801 atgttgtcctcatgggtgttgaaggtacgatttggctaggtgttgtgtgtagggatgtcttttatggtgtttatttt 725  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 308
Target Start/End: Original strand, 1760924 - 1761016
Alignment:
Q  217 tgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtgt-ttttatggtgtttattttggatgttccgtctatat 308  Q
    |||||||| |||| | |||||||| |||||||| || ||||||||| |||||| ||| ||||||| ||||||| |||| | ||||||||||||    
T  1760924 tgttgtccgcatgagtgttgaaggcagggtttgattaggtgttgtgcgtatgaatgtcttttatgatgtttatattgggttttccgtctatat 1761016  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 300
Target Start/End: Complemental strand, 25184925 - 25184841
Alignment:
Q  217 tgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtgt-ttttatggtgtttattttggatgttcc 300  Q
    ||||||||||||| | ||||||||||||| |||| | ||| |||||||||||  ||| |||||||||||||| || || ||||||    
T  25184925 tgttgtcctcatgagtgttgaaggtagggcttggctaggtattgtgtgtatggatgtcttttatggtgtttacttcgggtgttcc 25184841  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 15906989 - 15907044
Alignment:
Q  221 gtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtgtttt 276  Q
    ||||||||||| ||||||||||||||| || | ||||||||||||| | |||||||    
T  15906989 gtcctcatgggtgttgaaggtagggttgggctaggtgttgtgtgtaggggtgtttt 15907044  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 823199 - 823117
Alignment:
Q  220 tgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtg--tttttatggtgtttattttggatgttcc 300  Q
    |||||||||||| ||||||||||||| ||| || || |||||||||| | |||  ||||||||||||||| ||||| ||||||    
T  823199 tgtcctcatgggtgttgaaggtaggggttgattaggggttgtgtgtaagggtgtctttttatggtgtttaatttgggtgttcc 823117  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 16266029 - 16266072
Alignment:
Q  216 atgttgtcctcatgggcgttgaaggtagggtttggtttggtgtt 259  Q
    |||||||||||||||| |||||||||||||||||||| ||||||    
T  16266029 atgttgtcctcatgggtgttgaaggtagggtttggttaggtgtt 16266072  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 45354713 - 45354638
Alignment:
Q  217 tgttgtcctcatgggcgttgaaggtagggtttggtttggtgttgtgtgtatgagtgt-ttttatggtgtttatttt 291  Q
    ||||||||| || || |||||||||||||||||| | |||| |||||||| | |||| ||||||| ||||||||||    
T  45354713 tgttgtcctaataggtgttgaaggtagggtttggctaggtgctgtgtgtaggggtgtcttttatgatgtttatttt 45354638  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 7104950 - 7104978
Alignment:
Q  13 aaggttgagaggtggtggaagctgtatga 41  Q
    |||||||||||||||||||||||||||||    
T  7104950 aaggttgagaggtggtggaagctgtatga 7104978  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 308
Target Start/End: Complemental strand, 13018072 - 13018000
Alignment:
Q  237 aaggtagggtttggtttggtgttgtgtgtatgagtgt-ttttatggtgtttattttggatgttccgtctatat 308  Q
    ||||||| ||||| || |||| | |||||| | |||| ||||||| ||||||||||||||||| |||||||||    
T  13018072 aaggtagagtttgattaggtggtatgtgtaggggtgtcttttatgatgtttattttggatgtttcgtctatat 13018000  T

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