View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21448_low_3 (Length: 486)

Name: NF21448_low_3
Description: NF21448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21448_low_3
NF21448_low_3
[»] chr7 (2 HSPs)
chr7 (18-284)||(3417205-3417471)
chr7 (329-486)||(3417516-3417673)
[»] chr5 (4 HSPs)
chr5 (23-281)||(12540923-12541184)
chr5 (336-486)||(12540718-12540868)
chr5 (24-281)||(28385572-28385832)
chr5 (338-486)||(28385367-28385515)
[»] chr2 (6 HSPs)
chr2 (23-281)||(13440438-13440699)
chr2 (23-281)||(13448601-13448862)
chr2 (336-486)||(13448396-13448546)
chr2 (329-486)||(13440233-13440390)
chr2 (329-477)||(13454876-13455024)
chr2 (23-281)||(13455072-13455333)
[»] scaffold0536 (3 HSPs)
scaffold0536 (127-281)||(6295-6449)
scaffold0536 (148-251)||(1270-1373)
scaffold0536 (24-69)||(6189-6234)
[»] chr6 (4 HSPs)
chr6 (24-277)||(12589847-12590103)
chr6 (108-281)||(12483229-12483402)
chr6 (329-450)||(12483450-12483577)
chr6 (365-399)||(12590197-12590231)
[»] chr4 (8 HSPs)
chr4 (133-279)||(48974349-48974495)
chr4 (338-459)||(48965389-48965510)
chr4 (169-281)||(48958385-48958497)
chr4 (127-281)||(48912129-48912283)
chr4 (329-459)||(48958204-48958337)
chr4 (329-399)||(48961413-48961486)
chr4 (24-70)||(48962746-48962792)
chr4 (215-261)||(48965587-48965633)
[»] chr8 (2 HSPs)
chr8 (147-250)||(12641285-12641388)
chr8 (24-70)||(12641159-12641205)


Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 3417205 - 3417471
Alignment:
Q  18 gtattcaacactatgagaaaaccgcaggtcacaaggcttggcatcttggtccatcttctatttggagaaccactctagagaaagcaggtgggggaaacga 117  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3417205 gtattcaacactatgagaaaaccgtaggtcacaaggcttggcatcttggtccatcttctatttggagaaccactctagagaaatcaggtgggggaaacga 3417304  T
Q  118 gggtgctgagagtgagcatgagtgcctgagttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgat 217  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3417305 gggtgctgagagtgagcatgagtgcctgcgttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttaaactatttctctgat 3417404  T
Q  218 aaacaactatatgagattgcatgcgcaatagaagcatcgggtcacccattcatatgggttgttcttg 284  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3417405 aaacaactatatgagattgcatacgcaatagaagcatcgggtcacccattcatatgggttgttcttg 3417471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 329 - 486
Target Start/End: Original strand, 3417516 - 3417673
Alignment:
Q  329 tggttgtcgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtag 428  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3417516 tggttgccgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccaccctgcggtag 3417615  T
Q  429 ggggatttatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagt 486  Q
    |||||||||||||||||||||||||||||||||| || ||||||||| |||| |||||    
T  3417616 ggggatttatgacacattgtggggggaactcatttgttgaggctgttggtgcaggagt 3417673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 23 - 281
Target Start/End: Complemental strand, 12541184 - 12540923
Alignment:
Q  23 caacactatgagaaaaccgcaggtcacaaggcttggcatcttggtccatcttct---atttggagaaccactctagagaaagcaggtgggggaaacgagg 119  Q
    |||||||| ||||||||| | ||||||||||||||||||||||||||| |||||   |||  || || || || ||||||||||||  ||||||| ||||    
T  12541184 caacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcttttattcagaaaaacattcaagagaaagcagggaggggaaatgagg 12541085  T
Q  120 gtgctgagagtgagcatgagtgcctgagttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataa 219  Q
    |||||| ||| ||||| |||| ||| || |||||||||||||| ||||||||||||||| |||||||||||||||||||| | ||  |||||| ||| ||    
T  12541084 gtgctgcgagcgagcacgagtcccttagctggctcaactcacagcaagttaactcagtggtgtacatatgttttggaagcataaatcatttctttgacaa 12540985  T
Q  220 acaactatatgagattgcatgcgcaatagaagcatcgggtcacccattcatatgggttgttc 281  Q
    ||||||||||||||||||||| ||| |||||| |  ||||||||||||||||||||||||||    
T  12540984 acaactatatgagattgcatgtgcagtagaaggaatgggtcacccattcatatgggttgttc 12540923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 336 - 486
Target Start/End: Complemental strand, 12540868 - 12540718
Alignment:
Q  336 cgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatt 435  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||    
T  12540868 cgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggatt 12540769  T
Q  436 tatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagt 486  Q
    |||||||||||||||||| |||||| | |||||||||||| ||||||||||    
T  12540768 tatgacacattgtgggggaaactcaattgtagaggctgttggtgcgggagt 12540718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 24 - 281
Target Start/End: Complemental strand, 28385832 - 28385572
Alignment:
Q  24 aacactatgagaaaaccgcaggtcacaaggcttggcatcttggtccatcttc---tatttggagaaccactctagagaaagcaggtgggggaaacgaggg 120  Q
    ||||||| ||||||||| | ||||||||||||||||||||||||||| ||||   |||| | | |||   || |||||||||||    ||||||| || |    
T  28385832 aacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcctttattcgtaaaactgttcaagagaaagcagagaagggaaacaagag 28385733  T
Q  121 tgctgagagtgagcatgagtgcctgagttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataaa 220  Q
    || || ||| ||||| ||||||||||  |||||||| ||||| | ||||||||||||  |||||||||||||||||||| | ||| ||||||||||||||    
T  28385732 tgatgtgagcgagcacgagtgcctgaactggctcaaatcacagcgagttaactcagttgtgtacatatgttttggaagcataaaccatttctctgataaa 28385633  T
Q  221 caactatatgagattgcatgcgcaatagaagcatcgggtcacccattcatatgggttgttc 281  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  28385632 caactatatgagattgcatgcgcagtagaagcatcaggtcacccattcatatgggttgttc 28385572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 338 - 486
Target Start/End: Complemental strand, 28385515 - 28385367
Alignment:
Q  338 aagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggattta 437  Q
    |||||||||||||||||||||||||||||||||||||| ||  | ||||||||||||||||| |||| |||||||||| | |||||||| |||||||||     
T  28385515 aagggatttgaggagagaaacattggaaagaagggtttcataatcaggggttgggccccacaagttctgatattgagcaaccctgcggtggggggatttc 28385416  T
Q  438 tgacacattgtggggggaactcattcgtagaggctgttagtgcgggagt 486  Q
    |||||||||| || ||||||||| | |||||||||||| | ||||||||    
T  28385415 tgacacattgcggagggaactcaattgtagaggctgttggcgcgggagt 28385367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 23 - 281
Target Start/End: Complemental strand, 13440699 - 13440438
Alignment:
Q  23 caacactatgagaaaaccgcaggtcacaaggcttggcatcttggtccatcttct---atttggagaaccactctagagaaagcaggtgggggaaacgagg 119  Q
    |||||||||||||||||| | |||||||||| ||||||||| |||||| |||||   ||| | | ||||| || |||||||||||   ||||||| ||||    
T  13440699 caacactatgagaaaaccacgggtcacaaggtttggcatctcggtccaacttctcttattcgtaaaaccattcaagagaaagcagagaggggaaaggagg 13440600  T
Q  120 gtgctgagagtgagcatgagtgcctgagttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataa 219  Q
    ||| || ||    ||| || ||| ||||||||||| ||||| |  |||||||||| |||||||||||||||||||||||| | |||||||||||||||||    
T  13440599 gtgatgtgaacatgcacgaatgcatgagttggctcgactcagagaaagttaactcggtgttgtacatatgttttggaagcatcaactatttctctgataa 13440500  T
Q  220 acaactatatgagattgcatgcgcaatagaagcatcgggtcacccattcatatgggttgttc 281  Q
    ||||||||||||||| || |||||||||||||||||  ||||||||||||||||||||||||    
T  13440499 acaactatatgagatggcgtgcgcaatagaagcatctagtcacccattcatatgggttgttc 13440438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 23 - 281
Target Start/End: Complemental strand, 13448862 - 13448601
Alignment:
Q  23 caacactatgagaaaaccgcaggtcacaaggcttggcatcttggtccatcttct---atttggagaaccactctagagaaagcaggtgggggaaacgagg 119  Q
    |||||||| |||||| || | |||||||||| |||||||||||||||| |||||   ||| | | |||  ||| ||||||| |||   ||||||| ||||    
T  13448862 caacactacgagaaagccacgggtcacaaggtttggcatcttggtccaacttctcttattcgcaaaactgctcaagagaaatcagagaggggaaatgagg 13448763  T
Q  120 gtgctgagagtgagcatgagtgcctgagttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataa 219  Q
    |||||| || || ||| ||| |||||||||||||| | ||| |   |||||||||||||||||||||||||||||||||| | |||||||| ||||||||    
T  13448762 gtgctgtgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcatcaactatttttctgataa 13448663  T
Q  220 acaactatatgagattgcatgcgcaatagaagcatcgggtcacccattcatatgggttgttc 281  Q
    ||||||||| ||||| ||||| || ||||||||||| |||||||||||||||||||||||||    
T  13448662 acaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttc 13448601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 336 - 486
Target Start/End: Complemental strand, 13448546 - 13448396
Alignment:
Q  336 cgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatt 435  Q
    ||||||||||||| |||||||| || || ||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||    
T  13448546 cgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcagtggggggatt 13448447  T
Q  436 tatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagt 486  Q
    |||||| ||||| ||||||||||||  ||||||||||||||||||||||||    
T  13448446 tatgacgcattgcggggggaactcaaccgtagaggctgttagtgcgggagt 13448396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 329 - 486
Target Start/End: Complemental strand, 13440390 - 13440233
Alignment:
Q  329 tggttgtcgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtag 428  Q
    |||||| | |||||||| || |||||||||||| | | || |||||||||| ||| ||||||||||||||| ||| ||||||||||||| |||||||| |    
T  13440390 tggttgccaaagggattcgaagagagaaacattaggaggatgggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcggtgg 13440291  T
Q  429 ggggatttatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagt 486  Q
    ||||||||||||| ||||| |||||||||||| | |||||| ||||||||||||||||    
T  13440290 ggggatttatgacgcattgcggggggaactcaattgtagagtctgttagtgcgggagt 13440233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 329 - 477
Target Start/End: Complemental strand, 13455024 - 13454876
Alignment:
Q  329 tggttgtcgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtag 428  Q
    |||||| ||||||||||||| |||| |||||| |  || |||||||||||| ||||||||||||||||||| ||| |||||||||| || ||||| || |    
T  13455024 tggttgccgaagggatttgaagagaaaaacatcgagaaaaagggtttgatcattaggggttgggccccacaagttaagatattgagtcaccctgcagtgg 13454925  T
Q  429 ggggatttatgacacattgtggggggaactcattcgtagaggctgttag 477  Q
    ||||||||||||| ||||| |||||||||||| ||||||||||||||||    
T  13454924 ggggatttatgacgcattgcggggggaactcaatcgtagaggctgttag 13454876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 23 - 281
Target Start/End: Complemental strand, 13455333 - 13455072
Alignment:
Q  23 caacactatgagaaaaccgcaggtcacaaggcttggcatcttggtccatcttct---atttggagaaccactctagagaaagcaggtgggggaaacgagg 119  Q
    |||||||| || |||||  |||||||||||| ||||||| |||||||| |||||   ||||| ||||||  || ||| ||| |||   ||||||||||||    
T  13455333 caacactacgaaaaaacaacaggtcacaaggtttggcatattggtccaacttctcttatttgcagaaccgttcaagaaaaatcagagaggggaaacgagg 13455234  T
Q  120 gtgctgagagtgagcatgagtgcctgagttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataa 219  Q
     |  || || ||  || ||||||||||| |||||  ||||| |   |||||||||||| ||||||||||||||||||||| | || ||||  ||| ||||    
T  13455233 tttttgtgaatgtacacgagtgcctgagctggcttgactcaaagagagttaactcagtattgtacatatgttttggaagcatcaattattcatctaataa 13455134  T
Q  220 acaactatatgagattgcatgcgcaatagaagcatcgggtcacccattcatatgggttgttc 281  Q
    ||||||||||||||| |||||| || |||||||| | ||||| || ||||||||||||||||    
T  13455133 acaactatatgagatggcatgctcactagaagcagcaggtcaaccgttcatatgggttgttc 13455072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 127 - 281
Target Start/End: Original strand, 6295 - 6449
Alignment:
Q  127 gagtgagcatgagtgcctgagttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataaacaacta 226  Q
    ||||| ||||||||| |||||||||||  ||||  | | || ||||||||||||||||||||| |||||||||||   |  |||| | |||||||||||     
T  6295 gagtgtgcatgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactt 6394  T
Q  227 tatgagattgcatgcgcaatagaagcatcgggtcacccattcatatgggttgttc 281  Q
    || ||||||||||| |  ||||||||||||||||||  |||||||||||||||||    
T  6395 tacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttc 6449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 251
Target Start/End: Original strand, 1270 - 1373
Alignment:
Q  148 ttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataaacaactatatgagattgcatgcgcaata 247  Q
    ||||||||||||| | | || |||||||||  | |||||||| ||||||| |||   ||||||| ||||||||||| | |||||||||||| | ||| ||    
T  1270 ttggctcaactcaaagcgagataactcagtactctacatatgctttggaaccttttgctatttccctgataaacaattgtatgagattgcaagtgcacta 1369  T
Q  248 gaag 251  Q
    ||||    
T  1370 gaag 1373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 6189 - 6234
Alignment:
Q  24 aacactatgagaaaaccgcaggtcacaaggcttggcatcttggtcc 69  Q
    ||||||| ||||||||  |||||||||| |||||||||||||||||    
T  6189 aacactacgagaaaactacaggtcacaaagcttggcatcttggtcc 6234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 24 - 277
Target Start/End: Original strand, 12589847 - 12590103
Alignment:
Q  24 aacactatgagaaaaccgcaggtcacaaggcttggcatcttggtccatcttc---tatttggagaaccactctagagaaagcaggtgggggaaacgaggg 120  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||   ||||   | |||   || ||||||||||| | ||||||| ||| |    
T  12589847 aacactatgagaaaaccacaggtcacaaggcttggcatcttggtccagcttctcttattcacaaaactgttcaagagaaagcagataggggaaatgagag 12589946  T
Q  121 tgctgagagtgagcatgagtgcctgagttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataaa 220  Q
    || || ||  | ||| ||||| ||||||||||| |||||  | | || |||||| |||||||||||||| ||||| ||| |   ||||||||| ||||||    
T  12589947 tgttgtgaacgtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagcatatgctatttctcagataaa 12590046  T
Q  221 caactatatgagattgcatgcgcaatagaagcatcgggtcacccattcatatgggtt 277  Q
    ||||| ||||||||| | || |  ||||||||||| || |||  |||| ||||||||    
T  12590047 caactttatgagatttcgtgtggcatagaagcatcaggccacgaattcgtatgggtt 12590103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 108 - 281
Target Start/End: Original strand, 12483229 - 12483402
Alignment:
Q  108 ggggaaacgagggtgctgagagtgagcatgagtgcctgagttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaacta 207  Q
    ||||||||||| ||| || ||| | ||||||||| |  |||||||| |||||| | ||||  || ||||||||||||||||| ||||| ||| |   | |    
T  12483229 ggggaaacgagagtgttgtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtacatatgctttgggagcctatgcaa 12483328  T
Q  208 tttctctgataaacaactatatgagattgcatgcgcaatagaagcatcgggtcacccattcatatgggttgttc 281  Q
    ||||||||||||||| || || || ||| |||||| |||||||||||||||| |   |||||||||||||||||    
T  12483329 tttctctgataaacagctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttc 12483402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 450
Target Start/End: Original strand, 12483450 - 12483577
Alignment:
Q  329 tggttgtcgaagggatttgaggagagaaacattgga------aagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctg 422  Q
    |||||| |||||||||||||||||||||||||| ||      |||| |||||| ||| | ||||| ||||| |||||||| | ||| |||||||| ||||    
T  12483450 tggttgccgaagggatttgaggagagaaacattagaaggaataagatgggtttaatcatcagggggtgggcaccacaggtactgattttgagccaccctg 12483549  T
Q  423 cggtagggggatttatgacacattgtgg 450  Q
    | || || | ||||||||| || |||||    
T  12483550 cagtgggtgcatttatgactcactgtgg 12483577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 399
Target Start/End: Original strand, 12590197 - 12590231
Alignment:
Q  365 aagaagggtttgatcgttaggggttgggccccaca 399  Q
    ||||||||||||||| |||||||||||||||||||    
T  12590197 aagaagggtttgatcattaggggttgggccccaca 12590231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 279
Target Start/End: Complemental strand, 48974495 - 48974349
Alignment:
Q  133 gcatgagtgcctgagttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataaacaactatatgag 232  Q
    |||||||||| | |||||||| || ||| | |||   ||||||||| | ||||||||||| || ||| |   | ||||| || |||| ||| | ||||||    
T  48974495 gcatgagtgcttaagttggctaaattcaaagcaacccaactcagtgctctacatatgtttcgggagcctctgccatttcactaataagcaattgtatgag 48974396  T
Q  233 attgcatgcgcaatagaagcatcgggtcacccattcatatgggttgt 279  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||    
T  48974395 attgcaagcgcaatagaagcatcgggtcaccaattcatatgggttgt 48974349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 338 - 459
Target Start/End: Complemental strand, 48965510 - 48965389
Alignment:
Q  338 aagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggattta 437  Q
    |||||||| || |||||||||||||||||||||||||||||  ||||||||||||| || ||||||| |||  ||||||| || || || || |  ||||    
T  48965510 aagggattcgaagagagaaacattggaaagaagggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctgtgggtgccttta 48965411  T
Q  438 tgacacattgtggggggaactc 459  Q
    |||| ||||||||  |||||||    
T  48965410 tgactcattgtggttggaactc 48965389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 48958497 - 48958385
Alignment:
Q  169 taactcagtgttgtacatatgttttggaagcttgaactatttctctgataaacaactatatgagattgcatgcgcaatagaagcatcgggtcacccattc 268  Q
    ||||||||||||||||||||| ||||||||| |    ||||| |||||||||||||| ||||||||||| || |  ||||||||||| ||||||  |||     
T  48958497 taactcagtgttgtacatatgctttggaagcatatgttatttatctgataaacaactttatgagattgcgtgtgggatagaagcatcaggtcacgaattt 48958398  T
Q  269 atatgggttgttc 281  Q
     ||||||||||||    
T  48958397 gtatgggttgttc 48958385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 281
Target Start/End: Original strand, 48912129 - 48912283
Alignment:
Q  127 gagtgagcatgagtgcctgagttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataaacaacta 226  Q
    ||||| ||| |||||  |||||||||| |||||  |||||| |||||| ||| |||||||||| |||||||||       |||| || |||||||||||     
T  48912129 gagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccaatgtcatttttcggataaacaactt 48912228  T
Q  227 tatgagattgcatgcgcaatagaagcatcgggtcacccattcatatgggttgttc 281  Q
    ||||||||||| ||||  || ||||||||| |||||  |||||||||||||||||    
T  48912229 tatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttc 48912283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 459
Target Start/End: Complemental strand, 48958337 - 48958204
Alignment:
Q  329 tggttgtcgaagggatttgaggagagaaacattggaaagaag---ggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcgg 425  Q
    |||||| |||| ||||| || |||||||||||||||||||||   ||||||||| ||||||| ||||||||||| |||  |||  |||||||   ||| |    
T  48958337 tggttgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccg 48958238  T
Q  426 tagggggatttatgacacattgtggggggaactc 459  Q
    | || | ||||||||||||||| ||| |||||||    
T  48958237 tgggtgcatttatgacacattgcgggtggaactc 48958204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 399
Target Start/End: Complemental strand, 48961486 - 48961413
Alignment:
Q  329 tggttgtcgaagggatttgaggagagaaacattgga---aagaagggtttgatcgttaggggttgggccccaca 399  Q
    |||||| |||| |||||||| ||||||||||||| |   ||||||||||||||| ||| ||| |||||||||||    
T  48961486 tggttgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccaca 48961413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 48962792 - 48962746
Alignment:
Q  24 aacactatgagaaaaccgcaggtcacaaggcttggcatcttggtcca 70  Q
    ||||||| ||||||||| | |||||||||||||||||||| ||||||    
T  48962792 aacactacgagaaaaccacgggtcacaaggcttggcatctcggtcca 48962746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 48965633 - 48965587
Alignment:
Q  215 gataaacaactatatgagattgcatgcgcaatagaagcatcgggtca 261  Q
    |||||||| || ||||||||||| || ||||||||||||||||||||    
T  48965633 gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtca 48965587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 250
Target Start/End: Original strand, 12641285 - 12641388
Alignment:
Q  147 gttggctcaactcacaacaagttaactcagtgttgtacatatgttttggaagcttgaactatttctctgataaacaactatatgagattgcatgcgcaat 246  Q
    |||||||||| ||| | |||| ||| |||||||| |||||||||||||| ||| |    |||||||||||||||||||| || ||||||||  ||| |||    
T  12641285 gttggctcaattcaaagcaagataattcagtgttatacatatgttttgggagcatctcttatttctctgataaacaactttacgagattgcgagcggaat 12641384  T
Q  247 agaa 250  Q
    ||||    
T  12641385 agaa 12641388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 12641159 - 12641205
Alignment:
Q  24 aacactatgagaaaaccgcaggtcacaaggcttggcatcttggtcca 70  Q
    |||||||||||||||||   ||| |||||||||||||||||||||||    
T  12641159 aacactatgagaaaaccatgggttacaaggcttggcatcttggtcca 12641205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University