View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21448_low_4 (Length: 408)
Name: NF21448_low_4
Description: NF21448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21448_low_4 |
 | |
|
| [»] scaffold0202 (1 HSPs) |
| | |
|
| [»] scaffold0018 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0202 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 60 - 392
Target Start/End: Original strand, 2053 - 2378
Alignment:
| Q |
60 |
gatggttacaatcattacttctaaagtgggagtcaggtaatacaatgttttgaaagtgttggagttttggtgatatgatcggcgtgccttttgatgaatt |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||| || ||||||| ||||| ||||||||||||||||||||| ||||| |
|
|
| T |
2053 |
gatggttacaatcattacttctaaagtgggagtcaggtaatgcaatgtttcgaaggttttggagtggtggtggtatgatcggcgtgccttttgaagaatt |
2152 |
T |
|
| Q |
160 |
tggagaagaaattctgcttttagggagaaaacaatgagtttagtgttggtgtgtggtccttgtgtaatcagtcagttgcttagtctgctcgggagtgtag |
259 |
Q |
| |
|
|||||||||||||| | |||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2153 |
tggagaagaaattcagtttttagggagcaca-----------gtgttggtgtgtggtccttgtgtaatcagtcagttgcttagtctgctcgggagtgtag |
2241 |
T |
|
| Q |
260 |
gagggcctggggcggatttattgcacaatgtagtgggtgtgtagctaaaatattaaagcacctctttgcaagaggcaac----attgatgttggttgtca |
355 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | | ||||||||||||||| |
|
|
| T |
2242 |
gagagcctggggtggatttattgcacaatgtagtgggtgcgtagctgaaatattaaagcacctctttgcaagaggccgctttgaatgatgttggttgtca |
2341 |
T |
|
| Q |
356 |
aatctaaatctgcaatattctgcatgttctgtatggg |
392 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
2342 |
agtctaaatctgcaatattctgcaggttctgtatggg |
2378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 7e-99; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 194 - 392
Target Start/End: Original strand, 31093508 - 31093706
Alignment:
| Q |
194 |
tgagtttagtgttggtgtgtggtccttgtgtaatcagtcagttgcttagtctgctcgggagtgtaggagggcctggggcggatttattgcacaatgtagt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31093508 |
tgagtttagtgttggtgtgtggtccttgtgtaatcagtcagttgcttagtctgctcgggagtgtaggagggcctggggcggatttattgcacaatgtagt |
31093607 |
T |
|
| Q |
294 |
gggtgtgtagctaaaatattaaagcacctctttgcaagaggcaacattgatgttggttgtcaaatctaaatctgcaatattctgcatgttctgtatggg |
392 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31093608 |
gggtgcgtagttaaaatattaaagcacctctttgcaagaggcagcattgatgttggttgtcaagtctaaatctgcaatattctgcatgttctgtatggg |
31093706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 31093281 - 31093449
Alignment:
| Q |
20 |
taaccctctagcttgtttaggaacttgttctaatttcagggatggttacaatcattacttctaaagtgggagtcaggtaatacaatgttttgaaagtgtt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31093281 |
taaccctctagcttgtttaggaacttgttctaatttcagggatggttacaatcattacttctaaagtggtcgtcaggtaatacaatgttttgaaagtgtt |
31093380 |
T |
|
| Q |
120 |
ggagttttggtgatatgatcggcgtgccttttgatgaatttggagaagaaattctgcttttagggagaa |
188 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31093381 |
ggagttgtggtgatatgattggcgtgccttttgatgaatttggagaagaaattcagcttttagggagaa |
31093449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 31033790 - 31033742
Alignment:
| Q |
197 |
gtttagtgttggtgtgtggtccttgtgtaatcagtcagttgcttagtct |
245 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
31033790 |
gtttagtgttggtgtgtgatccttgtgtagtcagtcagctgcttagtct |
31033742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 259 - 336
Target Start/End: Original strand, 173253 - 173333
Alignment:
| Q |
259 |
ggagggcctggggcggatttattgcacaatgtagtgggtgtgtagctaaaatattaaag---cacctctttgcaagaggca |
336 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||| | || ||||||||||| ||||||||||||||||||| |
|
|
| T |
173253 |
ggagggcctgaggaggatttattgcacaatgtagtgggtgcagaactgaaatattaaagcaccacctctttgcaagaggca |
173333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 31213 - 31261
Alignment:
| Q |
197 |
gtttagtgttggtgtgtggtccttgtgtaatcagtcagttgcttagtct |
245 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
31213 |
gtttagtgttggtgtgtgatccttgtgtagtcagtcagctgcttagtct |
31261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University