View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21448_low_9 (Length: 271)
Name: NF21448_low_9
Description: NF21448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21448_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 43173834 - 43173595
Alignment:
| Q |
15 |
aaatagtacataccatcggtttgatatgtttctgattgtaagaagtcctttgccatatatatctcgacggcattaaatagtggtggaagagttgatctac |
114 |
Q |
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| T |
43173834 |
aaatagtacataccatcggtttgatatgtttctgattgtaagaagtcctttgccgtatatatctcgacggcattaaatagtggtggaagagttgatctac |
43173735 |
T |
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| Q |
115 |
tagtcttattaaaccaaagttccaacttcgtttcactaataactgataaataatacaggttttgaagatacacagtattgattggatcactatttaaaag |
214 |
Q |
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| T |
43173734 |
tagtcttattaaaccaatgttccaacttcgtttcactaataactgataaataatacaggttttgaagatacacagtattgattggatcactatttaaaag |
43173635 |
T |
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| Q |
215 |
ctccccatttacaaaaatgttgaactctctaatttgattt |
254 |
Q |
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| T |
43173634 |
ctccccatttacaaaaatgttgaactctctaatttgattt |
43173595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 261
Target Start/End: Complemental strand, 43164155 - 43163912
Alignment:
| Q |
15 |
aaatagtacataccatcggtttgatatgtttctgattgtaagaagtcctttgccatatatatctcgacggcattaaatagtggtggaagagttgatctac |
114 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||| |
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| T |
43164155 |
aaatagtacataccatcggtttggtatgtttctgattgtaagaagtcctttgacatatatatctcgaccgcattgaatagcggtggaagagttgatctac |
43164056 |
T |
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| Q |
115 |
tagtcttattaaaccaaagttccaacttcgtttcactaataactgataaataatacaggttttgaagatacacagtattgattggatcactatttaaaag |
214 |
Q |
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|||||||||||| |||||||| ||||| |||||||| ||| ||| | |||||||||||||||||||||||| || ||||| | |||||| ||| ||| |
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| T |
43164055 |
tagtcttattaagccaaagttttaacttagtttcacttatagctgttgaataatacaggttttgaagatacaaaggattgact---tcactacttagaag |
43163959 |
T |
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| Q |
215 |
ctccccatttacaaaaatgttgaactctctaatttgattttcttgga |
261 |
Q |
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| T |
43163958 |
cttcccatttacaaaaatattgaactctctgatttgattttcctgga |
43163912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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