View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21449_low_6 (Length: 208)

Name: NF21449_low_6
Description: NF21449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21449_low_6
NF21449_low_6
[»] chr5 (7 HSPs)
chr5 (1-208)||(1048789-1048992)
chr5 (10-57)||(2226970-2227017)
chr5 (10-57)||(15068410-15068457)
chr5 (10-57)||(23780774-23780821)
chr5 (10-57)||(23867727-23867774)
chr5 (10-57)||(30265877-30265924)
chr5 (11-57)||(36103699-36103745)
[»] chr7 (6 HSPs)
chr7 (10-57)||(7760054-7760101)
chr7 (10-50)||(13852265-13852305)
chr7 (10-57)||(10069143-10069190)
chr7 (10-57)||(18673276-18673323)
chr7 (10-57)||(45898146-45898193)
chr7 (10-53)||(47903201-47903244)
[»] chr8 (3 HSPs)
chr8 (10-57)||(10661103-10661150)
chr8 (10-57)||(14549173-14549220)
chr8 (10-57)||(33068215-33068262)
[»] chr6 (4 HSPs)
chr6 (10-57)||(35040296-35040343)
chr6 (16-57)||(10391114-10391155)
chr6 (10-55)||(10590802-10590847)
chr6 (28-57)||(19135217-19135246)
[»] chr4 (4 HSPs)
chr4 (10-53)||(40806904-40806947)
chr4 (10-57)||(40900169-40900216)
chr4 (10-57)||(43630527-43630574)
chr4 (14-51)||(41260228-41260265)
[»] chr2 (3 HSPs)
chr2 (10-57)||(44979855-44979902)
chr2 (11-57)||(42785716-42785762)
chr2 (10-46)||(44035266-44035302)
[»] chr1 (4 HSPs)
chr1 (10-57)||(16529586-16529633)
chr1 (14-57)||(27507581-27507624)
chr1 (10-57)||(51252501-51252548)
chr1 (1-57)||(32953988-32954044)
[»] scaffold0059 (1 HSPs)
scaffold0059 (10-57)||(69626-69673)
[»] scaffold0029 (1 HSPs)
scaffold0029 (10-57)||(40671-40718)
[»] chr3 (1 HSPs)
chr3 (10-57)||(39097895-39097942)


Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 1048789 - 1048992
Alignment:
Q  1 ttatcttatgtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaaccgctagtataaatatagatccaccaaacgaactcccttcaact 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1048789 ttatcttatgtttggatgatttttattctcaaagccgaaccaaaccaaaccgcgaaccgctggtataaatatagatccaccaaacgaactcccttcaact 1048888  T
Q  101 tgaaccgcatatttttcatcaaannnnnnnnnnnnnnnnnnnnttgaacttcatattttgccttttgaactgttagtgatcattgtaatttatttaaatg 200  Q
    |||||||||||||||||||||||                    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1048889 tgaaccgcatatttttcatcaaa----agagggagaaaaaaaattgaacttcatattttgccttttgaactgttagtgatcattgtaatttatttaaatg 1048984  T
Q  201 ggtatcaa 208  Q
    ||||||||    
T  1048985 ggtatcaa 1048992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 2226970 - 2227017
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||||||    
T  2226970 gtttggatgttttttatgctcaaaaccgaaccaaaccactccgcgaac 2227017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 15068457 - 15068410
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||||||||||| |||| || |||||||||||||||| ||||||||||    
T  15068457 gtttggatgattattatgcttaaaaccgaaccaaaccgcaccgcgaac 15068410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 23780821 - 23780774
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||||||||| |||||| || |||||||||||||||| ||||||||||    
T  23780821 gtttggatgacttttatgcttaaaaccgaaccaaaccgcaccgcgaac 23780774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 23867774 - 23867727
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||||||||| |||||| || |||||||||||||||| ||||||||||    
T  23867774 gtttggatgacttttatgcttaaaaccgaaccaaaccgcaccgcgaac 23867727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 30265877 - 30265924
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||| |||||||||||| ||||||||| ||||||||| ||||||||||    
T  30265877 gtttagatgatttttatgctcaaaaccaaaccaaaccgcaccgcgaac 30265924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 36103699 - 36103745
Alignment:
Q  11 tttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    ||||||||  |||||| ||||||||||||||||||| ||||||||||    
T  36103699 tttggatgtattttatgctcaaaaccgaaccaaaccgcaccgcgaac 36103745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 7760101 - 7760054
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  7760101 gtttggatgatttttatgctcaaaatcgaaccaaaccacaccgcgaac 7760054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 13852305 - 13852265
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacac 50  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  13852305 gtttggatgacttttatgctcaaaaccgaaccaaaccacac 13852265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 10069190 - 10069143
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||| ||||| |||||| ||||||||||||||||||| ||||||||||    
T  10069190 gtttagatgacttttatgctcaaaaccgaaccaaaccgcaccgcgaac 10069143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 18673276 - 18673323
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||||||||| |||||| ||||||||||||||||| | ||||||||||    
T  18673276 gtttggatgacttttatgctcaaaaccgaaccaaatcgcaccgcgaac 18673323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 45898146 - 45898193
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||||||||| |||||| | ||||||||||||||||| ||||||||||    
T  45898146 gtttggatgacttttatgcacaaaaccgaaccaaaccgcaccgcgaac 45898193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 47903244 - 47903201
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgc 53  Q
    ||||||||||||||||| || |||||||||||||||| ||||||    
T  47903244 gtttggatgatttttatgcttaaaaccgaaccaaaccgcaccgc 47903201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 10661150 - 10661103
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||    
T  10661150 gtttggatgacttttatgctcaaaaccgaaccaaaccgcaccgcgaac 10661103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 14549220 - 14549173
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||||||||| |||||| |||||||||||| |||||||||||||||||    
T  14549220 gtttggatgacttttatgctcaaaaccgaatcaaaccacaccgcgaac 14549173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 33068262 - 33068215
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||||||||| |||||| ||||||||||||||||||| |||| |||||    
T  33068262 gtttggatgacttttatgctcaaaaccgaaccaaaccgcaccacgaac 33068215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 35040296 - 35040343
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||    
T  35040296 gtttggatgacttttatgctcaaaaccgaaccaaaccgcaccgcgaac 35040343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 10391114 - 10391155
Alignment:
Q  16 atgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||| |||||| ||||||||||||||||||||||||||||||    
T  10391114 atgacttttatgctcaaaaccgaaccaaaccacaccgcgaac 10391155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 10590847 - 10590802
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcga 55  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||    
T  10590847 gtttggatgacttttatgctcaaaaccgaaccaaaccgcaccgcga 10590802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 57
Target Start/End: Original strand, 19135217 - 19135246
Alignment:
Q  28 ctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    ||||||||||||||||||||||||||||||    
T  19135217 ctcaaaaccgaaccaaaccacaccgcgaac 19135246  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 40806904 - 40806947
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgc 53  Q
    |||||||||| |||||| ||||||||||||||||||||||||||    
T  40806904 gtttggatgacttttatgctcaaaaccgaaccaaaccacaccgc 40806947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 40900169 - 40900216
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||    
T  40900169 gtttggatgacttttatgctcaaaaccgaaccaaaccgcaccgcgaac 40900216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 43630574 - 43630527
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||||||||| |||||| ||||||| ||||||||||| ||||||||||    
T  43630574 gtttggatgacttttatactcaaaatcgaaccaaaccgcaccgcgaac 43630527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 41260265 - 41260228
Alignment:
Q  14 ggatgatttttattctcaaaaccgaaccaaaccacacc 51  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  41260265 ggatgatttttatgctcaaaaccgaaccaaaccgcacc 41260228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 44979855 - 44979902
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||    
T  44979855 gtttggatgacttttatgctcaaaaccgaaccaaaccgcaccgcgaac 44979902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 42785716 - 42785762
Alignment:
Q  11 tttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    ||||||||| |||||| ||||||| ||||||||||| ||||||||||    
T  42785716 tttggatgacttttatgctcaaaatcgaaccaaaccgcaccgcgaac 42785762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 44035302 - 44035266
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaacc 46  Q
    |||||||||| |||||| |||||||||||||||||||    
T  44035302 gtttggatgacttttatgctcaaaaccgaaccaaacc 44035266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 16529586 - 16529633
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||    
T  16529586 gtttggatgacttttatgctcaaaaccgaaccaaaccgcaccgcgaac 16529633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 27507581 - 27507624
Alignment:
Q  14 ggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||||| |||||||||||||||||||||||||| ||||||||||    
T  27507581 ggatgacttttattctcaaaaccgaaccaaaccgcaccgcgaac 27507624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 51252501 - 51252548
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||||||||| |||||| ||||||| ||||||||||| ||||||||||    
T  51252501 gtttggatgacttttatgctcaaaatcgaaccaaaccgcaccgcgaac 51252548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 32954044 - 32953988
Alignment:
Q  1 ttatcttatgtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||||| | |||||||||| ||||||  |||||||||||||||||| |||| |||||    
T  32954044 ttatctcaggtttggatgacttttatgttcaaaaccgaaccaaaccgcaccacgaac 32953988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 69626 - 69673
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||||||||| |||||| ||||||| ||||||||||| ||||||||||    
T  69626 gtttggatgacttttatgctcaaaatcgaaccaaaccgcaccgcgaac 69673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 40671 - 40718
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||||||||| | |||| ||||||||||||||||||| ||||||||||    
T  40671 gtttggatgactattatgctcaaaaccgaaccaaaccgcaccgcgaac 40718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 39097942 - 39097895
Alignment:
Q  10 gtttggatgatttttattctcaaaaccgaaccaaaccacaccgcgaac 57  Q
    |||||||||| |||||| ||||||| |||||||||||| |||||||||    
T  39097942 gtttggatgacttttatgctcaaaatcgaaccaaaccaaaccgcgaac 39097895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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