View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2144_high_1 (Length: 573)
Name: NF2144_high_1
Description: NF2144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2144_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 1 - 558
Target Start/End: Complemental strand, 42308032 - 42307475
Alignment:
| Q |
1 |
acttgaagatcaatagatcaacgaattacactttcagctttgatcagatgcttaatgataaggtgtatatttactattttcaaatgcttgtcaagtaaca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42308032 |
acttgaagatcaatagatcaacgaattacactttcagctttgatcagatgcttaatgataaggtgcatatttactattttcaaatgcttgtcaagtaaca |
42307933 |
T |
|
| Q |
101 |
gaaaatcttgtagattttgtaacaccattattgatggcctcaaacctgtcctgctgccttcttatagaaaatatttccaactaatgtaaagttacaaatg |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307932 |
gaaaatcttgtagattttgtaacaccattattgatggcctcaaacctgtcctgctcccttcttatagaaaatatttccaactaatgtaaagttacaaatg |
42307833 |
T |
|
| Q |
201 |
tcgcgcctttttagtccaaaaataaataaattctcacctttctaagccttttgtcaaacagggaaatactgctgtttatttgttgtatgcacatgctagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307832 |
tcgcgcctttttagtccaaaaataaataaattctcacctttctaagccttttgtcaaacagggaaatactgctgtttatttgttgtatgcacatgctagg |
42307733 |
T |
|
| Q |
301 |
atctgttccattatcgagaaatctggtaaagacatagaagaactaaaaaaggtaagtttttctaatttccatgatgatgacattagatttgttgaaaaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307732 |
atctgttccattatcgagaaatctggtaaagacatagaagaactaaaaaaggtaagtttttctaatttccatgatgatgacattagatttgttgaaaaaa |
42307633 |
T |
|
| Q |
401 |
gtaatttaattcctttttgcatcatatgcttaattttacaatgttaaacatatatatgaattgtgtataggttttatactagagtatatcatggttaaat |
500 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307632 |
gtaatttaattcctttttgcatcatatgcataattttacaatgttaaacatatatatgaattgtgtataggttttatactagagtatatcatggttaaat |
42307533 |
T |
|
| Q |
501 |
attagtcagttaagcagtcatctattgtgattgtgatatgattcaatactgcatttgt |
558 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42307532 |
attagtcagttaagcagtcatctattgtgattgtgatatgattcaatactgcatttgt |
42307475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 6e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 232 - 419
Target Start/End: Original strand, 51570528 - 51570711
Alignment:
| Q |
232 |
tctcacctttctaagccttttgtcaaacagggaaatactgctgtttatttgttgtatgcacatgctaggatctgttccattatcgagaaatctggtaaag |
331 |
Q |
| |
|
||||||||||||| || |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51570528 |
tctcacctttctatgcttttt-tccaacagggaaatactgctgtttatttgttgtatgcacatgctaggatctgttccattatcaggaaatctggtaaag |
51570626 |
T |
|
| Q |
332 |
acatagaagaactaaaaaaggtaagtttttctaatttccatgatgatgacattagatttgttgaaaaaagtaatttaattcctttttg |
419 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| || ||||||||||||| || ||| |||| |||||||||| ||||||| |
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| T |
51570627 |
acatagaagaactaaaaaaggtaagcttttctaatttc--tg-tgatgacattagaattattggaaaagttaatttaattgctttttg |
51570711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 51570229 - 51570298
Alignment:
| Q |
1 |
acttgaagatcaatagatcaacgaattacactttcagctttgatcagatgcttaatgataaggtgtatat |
70 |
Q |
| |
|
||||||||||||| ||| |||| ||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
51570229 |
acttgaagatcaacagaacaacaaattacactttcaactttgatcagatgcttaatgataaggtgcatat |
51570298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 231 - 385
Target Start/End: Complemental strand, 47972483 - 47972330
Alignment:
| Q |
231 |
ttctcacctttctaagccttttgtcaaacagggaaatactgctgtttatttgttgtatgcacatgctaggatctgttccattatcgagaaatctggtaaa |
330 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47972483 |
ttctcacctttctatgctttttgtcttacagggaaataccgctgtttatttgttgtatgcacatgctaggatctgttccattatcaggaaatctggtaaa |
47972384 |
T |
|
| Q |
331 |
gacatagaagaactaaaaaaggtaagtttttctaatttccatgatgatgacatta |
385 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| ||||||||| |||| |
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| T |
47972383 |
gacatagaagaactaaaaaaggtaa-ctgttctaatttctgtgatgatgatatta |
47972330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 47972787 - 47972694
Alignment:
| Q |
1 |
acttgaagatcaatagatcaacgaattacactttcagctttgatcagatgcttaatgataaggtgtatatttactattttcaaatgcttgtcaagt |
96 |
Q |
| |
|
||||||||||||||||| |||| |||||||| |||| ||||||||||||||||||||| |||||| ||| || | |||||||||| ||||||||| |
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|
| T |
47972787 |
acttgaagatcaatagaacaacaaattacaccttcaactttgatcagatgcttaatgacaaggtgcata--tattgttttcaaatgtttgtcaagt |
47972694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 232 - 359
Target Start/End: Original strand, 34033220 - 34033347
Alignment:
| Q |
232 |
tctcacctttctaagccttttgtcaaacagggaaatactgctgtttatttgttgtatgcacatgctaggatctgttccattatcgagaaatctggtaaag |
331 |
Q |
| |
|
||||||||| ||||| | |||| ||||||| ||||| || ||||||||| | ||||||||||||||||| ||||| || ||| |||||| ||||||| |
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|
| T |
34033220 |
tctcaccttcctaagtttattgtgtaacaggggaatacagcagtttatttgctctatgcacatgctaggatttgttctatcatcaggaaatcgggtaaag |
34033319 |
T |
|
| Q |
332 |
acatagaagaactaaaaaaggtaagttt |
359 |
Q |
| |
|
|||| |||||| |||| ||||||||||| |
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|
| T |
34033320 |
acattgaagaagtaaagaaggtaagttt |
34033347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 34032372 - 34032435
Alignment:
| Q |
1 |
acttgaagatcaatagatcaacgaattacactttcagctttgatcagatgcttaatgataaggt |
64 |
Q |
| |
|
||||||||||||| |||| ||||||||||| ||| |||||||||||||||| ||||||||| |
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|
| T |
34032372 |
acttgaagatcaacagattaacgaattacaagttcgattttgatcagatgcttagtgataaggt |
34032435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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