View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2144_high_7 (Length: 226)
Name: NF2144_high_7
Description: NF2144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2144_high_7 |
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| [»] chr1 (4 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 490605 - 490814
Alignment:
| Q |
17 |
aggttcactatagaagcagataagtccatcaaagatttgacaataataacagaatatgttggagatgtagactttttgaagaatagggaacatgatgatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
490605 |
aggttcactatagaagcagataagtccatcaaagatttgacaataataacagaatatgttggagatgtagactttttgaagaatagggaacatgatgatg |
490704 |
T |
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| Q |
117 |
gagatagcattatgacacttctttctgcttctaatccttcacagtcactggtcatctgcccagataaacgtagcaatatagcacgtttcattaacggcat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
490705 |
gagatagcattatgacacttctttctgcttctaatccttcacagtcactggtcatctgcccagataaacgtagcaatatagcacgtttcattaacggcat |
490804 |
T |
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| Q |
217 |
caacaatcac |
226 |
Q |
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|||||||||| |
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| T |
490805 |
caacaatcac |
490814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 27 - 226
Target Start/End: Original strand, 499247 - 499446
Alignment:
| Q |
27 |
tagaagcagataagtccatcaaagatttgacaataataacagaatatgttggagatgtagactttttgaagaatagggaacatgatgatggagatagcat |
126 |
Q |
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||||||| ||||| ||||| ||||| |||||| |||||| |||||||||||||||| |||||||||| |||||| | ||| |||| || |||||||| || |
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| T |
499247 |
tagaagcggataaatccataaaagacttgacagtaataagagaatatgttggagatatagactttttaaagaatcgtgaatatgacgacggagataggat |
499346 |
T |
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| Q |
127 |
tatgacacttctttctgcttctaatccttcacagtcactggtcatctgcccagataaacgtagcaatatagcacgtttcattaacggcatcaacaatcac |
226 |
Q |
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| T |
499347 |
tatgacacttctttccgcatctaatccttcacaatcactggtcgtctttccagataaacgtagcaacatagcacctttcattactggcatcgacaatcac |
499446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 494287 - 494490
Alignment:
| Q |
21 |
tcactatagaagcagataagtccatcaaagatttgacaataataacagaatatgttggagatgtagactttttgaagaatagggaacatgatgatggaga |
120 |
Q |
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||||| ||||||| ||||| || || ||||| | ||||||||||||||||||||||||||||||||||||||| |||| ||||| |||| |||| || |
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| T |
494287 |
tcactgtagaagctgataaatctataaaagaatcgacaataataacagaatatgttggagatgtagactttttagtgaatcgggaatatgacaatggtga |
494386 |
T |
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| Q |
121 |
tagcattatgacacttctttctgcttctaatccttcacagtcactggtcatctgcccagataaacgtagcaatatagcacgtttcattaacggcatcaac |
220 |
Q |
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| T |
494387 |
tagcattatgacatttctttctgcttcta--ccctttcaatcgctggtcatctgcccagataaacgtagcaacatatcacgtttcgttaatggaatcaac |
494484 |
T |
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| Q |
221 |
aatcac |
226 |
Q |
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|||||| |
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| T |
494485 |
aatcac |
494490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 226
Target Start/End: Original strand, 502294 - 502496
Alignment:
| Q |
27 |
tagaagcagataagtccatcaaagatttgacaataataacagaatatgttggagatgtagactttttgaagaatagggaacatgatgatg-gag--atag |
123 |
Q |
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||||||| ||||| |||| ||| ||||||||||||| |||||||||| |||||||| |||| | |||||| ||||| ||||||| | || |||| |
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| T |
502294 |
tagaagctgataaacccatagaagctttgacaataatagcagaatatgtgggagatgtggactacctaaagaatcgggaagatgatgaggtgaataatag |
502393 |
T |
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| Q |
124 |
cattatgacacttctttctgcttctaatccttcacagtcactggtcatctgcccagataaacgtagcaatatagcacgtttcattaacggcatcaacaat |
223 |
Q |
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||| ||||||||||||| ||||||| |||||||||| || ||| ||||||||||||||||||||||||| |||||||||||||||| || ||||||||| |
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| T |
502394 |
catgatgacacttctttatgcttctgatccttcacaatcgctgatcatctgcccagataaacgtagcaacatagcacgtttcattagtggaatcaacaat |
502493 |
T |
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| Q |
224 |
cac |
226 |
Q |
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||| |
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| T |
502494 |
cac |
502496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 42 - 209
Target Start/End: Complemental strand, 19124302 - 19124132
Alignment:
| Q |
42 |
ccatcaaagatttgacaataataacagaatatgttggagatgtagactttttgaagaatagggaacatgatgatggagatag---cattatgacacttct |
138 |
Q |
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|||| |||| ||||||||||||| ||||||||||||||||||| |||| | |||||| ||||| ||||||| || ||| ||| ||| ||||||| |
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| T |
19124302 |
ccataaaagctttgacaataatagcagaatatgttggagatgtggactacgtaaagaatcgggaaaatgatgaggggaataataacatgatggcacttct |
19124203 |
T |
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| Q |
139 |
ttctgcttctaatccttcacagtcactggtcatctgcccagataaacgtagcaatatagcacgtttcatta |
209 |
Q |
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| T |
19124202 |
ttatgcttctgatccttcacaatcgctgatcatctgcccagataaacgtagcaacttagcacatttcatta |
19124132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 209
Target Start/End: Complemental strand, 19145285 - 19145125
Alignment:
| Q |
52 |
tttgacaataataacagaatatgttggagatgtagactttttgaagaatagggaacatgatgatggagatag---cattatgacacttctttctgcttct |
148 |
Q |
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||||||||||||| ||||||||||||||||||| |||| | |||||| ||||| ||||||| || ||| ||| ||||||||||||| ||||| | |
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| T |
19145285 |
tttgacaataatagcagaatatgttggagatgtggactacgtaaagaatcgggaaaatgatgaggggaataataacatgatgacacttctttatgctttt |
19145186 |
T |
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| Q |
149 |
aatccttcacagtcactggtcatctgcccagataaacgtagcaatatagcacgtttcatta |
209 |
Q |
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| T |
19145185 |
gatccttcacaatcgctgatcatctgcccaaataaacgtagcaacatagcacatttcatta |
19145125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 52 - 222
Target Start/End: Complemental strand, 19110281 - 19110105
Alignment:
| Q |
52 |
tttgacaataataacagaatatgttggagatgtagactt---tttgaagaatagggaacatgatgatgga---gatagcattatgacacttctttctgct |
145 |
Q |
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| T |
19110281 |
tttgacaataataacagaatatgttatagatgtggactacaataataagaatcgggaagatgatgaggggaatgataacatgatgacacttatttatgct |
19110182 |
T |
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| Q |
146 |
tctaatccttcacagtcactggtcatctgcccagataaacgtagcaatatagcacgtttcattaacggcatcaacaa |
222 |
Q |
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||| |||||||||| || ||| ||||||||||||||||||||||||| ||||||||||||||| || |||||||| |
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| T |
19110181 |
tctgatccttcacaatcgctgatcatctgcccagataaacgtagcaacttagcacgtttcattagtggaatcaacaa |
19110105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 226
Target Start/End: Complemental strand, 8767937 - 8767808
Alignment:
| Q |
97 |
gaatagggaacatgatgatggagatagcattatgacacttctttctgcttctaatccttcacagtcactggtcatctgcccagataaacgtagcaatata |
196 |
Q |
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| T |
8767937 |
gaatcgggaatatgatgatggagatagcataatgacacttctttctgcgtttgatccttctcaatcgttggtcatctgcctagatgaaccttgtaacata |
8767838 |
T |
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| Q |
197 |
gcacgtttcattaacggcatcaacaatcac |
226 |
Q |
| |
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| | ||||||||| ||||| || |||||| |
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| T |
8767837 |
tcgcatttcattaatggcataaaaaatcac |
8767808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 8762775 - 8762691
Alignment:
| Q |
97 |
gaatagggaacatgatgatggagatagcattatgacacttctttctgcttctaatccttcacagtcactggtcatctgcccagat |
181 |
Q |
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|||| ||||| ||||||||||||||||||| ||||||||||||||||| | | ||||||| || || |||||||||||| |||| |
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| T |
8762775 |
gaatcgggaatatgatgatggagatagcataatgacacttctttctgcgtttgatccttctcaatcgttggtcatctgcctagat |
8762691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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