View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2144_high_8 (Length: 210)
Name: NF2144_high_8
Description: NF2144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2144_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 22361213 - 22361037
Alignment:
| Q |
20 |
atgtattacctctggagattcaaccattccgagtccatcatcatggtattcgtctgcactaggcattcctacatagatgatcagaggtaaatataaagtg |
119 |
Q |
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| T |
22361213 |
atgtattacctctggagattcaaccattccgagtccatcatcatggtattcgtctgcactaggcattcctgcatagatgatcagaggtaaatataaagtg |
22361114 |
T |
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| Q |
120 |
tctgcatttgtctgtttcaaaagacctattgtacactaattttcataagacaattttttccctatttgtgttgttaa |
196 |
Q |
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| T |
22361113 |
tctgcatttgtctgtttcaaaagacctattgtacactaatttgcataagacaattttttccctatttgtgttgttaa |
22361037 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 54306411 - 54306447
Alignment:
| Q |
32 |
tggagattcaaccattccgagtccatcatcatggtat |
68 |
Q |
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| T |
54306411 |
tggagattcaaccattccgattccatcatcatggtat |
54306447 |
T |
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