View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2144_low_3 (Length: 366)
Name: NF2144_low_3
Description: NF2144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2144_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 41221922 - 41222269
Alignment:
| Q |
19 |
caatccttacatgcttacaatttcaaagacgtttgctctcacattgatgttgaaaatgaagaaagcaacaaaatgaatcagtaatatttacccagaaatc |
118 |
Q |
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| T |
41221922 |
caatccttacatgcttacaatttcaaagacgtttgctctcacattgatgttgaaaatgaagaaagcaacaaaatgaattagtaatatttacccagaaatc |
41222021 |
T |
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| Q |
119 |
gacttcgtcttcatctctgattaaacatggagccttaggaatctctgtgggctcgtcattacgtgcaaacctgccacgtacgcgtggtcgattgtctgct |
218 |
Q |
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| T |
41222022 |
gacttcgtcttcatctctgattaaacatggagccttaggaatctctgtgggctcgtcattgcgtgcaaacctgccacgtacgcgtggtcgattgtctgct |
41222121 |
T |
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| Q |
219 |
agtgtctttcgacatgcatactataaaaacaacacattcagactcttctctttctaatcaaactttgttaat----------tatagtatagtataaatt |
308 |
Q |
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| T |
41222122 |
agtgtctttcgacatgcatactataaaaacaacacattcagactcttctctttctaatcaaactttgttaattatagtatagtatagtatagtataaatt |
41222221 |
T |
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| Q |
309 |
ctctaatgatcttgattaccttaatggtcttgttaaagttcctctgtg |
356 |
Q |
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| T |
41222222 |
ctctaatgatcttgattaccttaatggtcttgttgaagttcctctgtg |
41222269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 2637116 - 2637053
Alignment:
| Q |
177 |
ttacgtgcaaacctgccacgtacgcgtggtcgattgtctgctagtgtctttcgacatgcatact |
240 |
Q |
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| T |
2637116 |
ttacgtgcgaatctgccacgtatgcgtgttcgattgtctgctagtgtctttcggcatgcatact |
2637053 |
T |
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