View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21451_high_4 (Length: 438)
Name: NF21451_high_4
Description: NF21451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21451_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 14 - 419
Target Start/End: Original strand, 38213635 - 38214046
Alignment:
| Q |
14 |
gaacagggtatatatagtgttctcaatataccgaaaactgataaggaagtgatacaaactacaaagaatttgatttatttgatcacgtgttatctaagat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
38213635 |
gaacagggtatatatagtgttctcaatataccgaaaactgataaggaagtggtacaaactacaaagaatgtgatttatttgatcacatgttatctaagat |
38213734 |
T |
|
| Q |
114 |
agacaccaaaata-tatagaggaatatataaaataaaagaatcataacaaattaa-----gatggctattatatgttcttcatcattgatctctcatcag |
207 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38213735 |
agacaccaaaaaaatatagaggaatatataaaatcaaagaatcataacaaattaaaataagatggctattatatgttcttcatcattgatctctcatcag |
38213834 |
T |
|
| Q |
208 |
aaccttggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttgcagtaattatagatcataaagtatttctgaacccatctcaatc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38213835 |
aaccttggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttgcagtaattatagatcataaagtatttctgaacccatctcaatc |
38213934 |
T |
|
| Q |
308 |
ttcttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggta |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38213935 |
ttcttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggta |
38214034 |
T |
|
| Q |
408 |
gtaagctgtaaa |
419 |
Q |
| |
|
|||||||||||| |
|
|
| T |
38214035 |
gtaagctgtaaa |
38214046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 73 - 419
Target Start/End: Original strand, 38217913 - 38218265
Alignment:
| Q |
73 |
tacaaagaatttgatttatttgatcacgtgttatctaagatagacaccaaaata-tatagaggaatatataaaataaaagaatcataacaaattaa---- |
167 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||| ||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38217913 |
tacaaagaatttgatttatttgatcatgtgctatctaaaatagacaccaaaaaaatatagaggaatatataaaatcaaagaatcataacaaattaaaata |
38218012 |
T |
|
| Q |
168 |
-gatggctattatatgttcttcatcattgatctctcatcagaaccttggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttgca |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38218013 |
agatggctattatatgttcttcatcattgatctctcatcagaaccttggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttgca |
38218112 |
T |
|
| Q |
267 |
gtaattatagatcataaagtatttctgaacccatctcaatcttcttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaagtg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38218113 |
gtaattatagatcataaagtatttctgaacccatctcaatcttcttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaagtg |
38218212 |
T |
|
| Q |
367 |
gaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaa |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38218213 |
gaagagacagaagataactcagtagctttgaaattgcggtagtaagctgtaaa |
38218265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 210 - 421
Target Start/End: Complemental strand, 42991666 - 42991457
Alignment:
| Q |
210 |
ccttggacgcttacactcagcaggaataccttctgggaatcgcttaagatcgttgcagtaattatagatcataaagtatttctgaacccatctcaatctt |
309 |
Q |
| |
|
||||| |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||| |
|
|
| T |
42991666 |
ccttgaacgcctacactcagcaggaataccttgtggaaatcgcttaagatcgttgcagtaattatatatcatgaaatacttctgaacccatctcaatctt |
42991567 |
T |
|
| Q |
310 |
cttctaccataagcatcaagctcattgctttgcaatgcagaatcagagaaggaagtggaagagacagaagataactcagtagctttgaaattgcggtagt |
409 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
42991566 |
cttctaccataagcatcaagctcgttgctctgcaatgcagaatcagagaaggaagtggaagagacag--gataattcagtagctttgaaattgcggtagt |
42991469 |
T |
|
| Q |
410 |
aagctgtaaatg |
421 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42991468 |
aagctgtaaatg |
42991457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 221 - 356
Target Start/End: Complemental strand, 35018348 - 35018213
Alignment:
| Q |
221 |
tacactcagcaggaataccttctgggaatcgcttaagatcgttgcagtaattatagatcataaagtatttctgaacccatctcaatcttcttctaccata |
320 |
Q |
| |
|
|||||||| |||||| ||||| |||||||||||||||||| || || || ||||| ||||| || || || ||||||||||||||||||||||||||||| |
|
|
| T |
35018348 |
tacactcaacaggaacaccttgtgggaatcgcttaagatcattacaatagttataaatcatgaaatacttttgaacccatctcaatcttcttctaccata |
35018249 |
T |
|
| Q |
321 |
agcatcaagctcattgctttgcaatgcagaatcaga |
356 |
Q |
| |
|
||||||||||||||| ||||| || ||| |||||| |
|
|
| T |
35018248 |
agcatcaagctcatttatttgccattcagcatcaga |
35018213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 42993697 - 42993602
Alignment:
| Q |
73 |
tacaaagaatttgatttatttgatcacgtgttatctaagatagacacc-aaaatatatagaggaatatataaaataaaagaatcataacaaattaa |
167 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| ||| | ||||||| |||| ||| ||||||| ||| |||| |||||||||||| ||||||| |
|
|
| T |
42993697 |
tacaaagaatttgatttatttcatcatctgttatataaaacagacaccaaaaaaatacagaggaagatagtaaatcaaagaatcataataaattaa |
42993602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University