View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21451_high_6 (Length: 338)
Name: NF21451_high_6
Description: NF21451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21451_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 16169201 - 16169410
Alignment:
| Q |
17 |
acaaaatacacttcgaatgctcatgtggggaacatatatttggacaatcaacgtcatgtttacagttattataaagtaagaatctaccaaatccttcaat |
116 |
Q |
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| T |
16169201 |
acaaaatacacttcgaatgttcatgtggggaacatatatttggacaatcaacatcctgtttacagttattataaagtaagaatctaccaaatccttcaat |
16169300 |
T |
|
| Q |
117 |
tgcaaaaagtaaatatataagtaggatgataacatacaaaagttttagaattgtaaccata-ttttttctcacttgcatgtaat--ttgaaaaattgttt |
213 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
16169301 |
tgcaaaaagtacatatataaataggatgataacatacaaaagttttagagttgtaaccatatttttttctcacttgcatgtaatcaatgaaaaattgttt |
16169400 |
T |
|
| Q |
214 |
gatcacttta |
223 |
Q |
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||||| |||| |
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| T |
16169401 |
gatcatttta |
16169410 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 29758086 - 29757913
Alignment:
| Q |
17 |
acaaaatacacttcgaatgctcatgtggggaacatatatttggacaatcaacgtcatgtttacagttattataaagtaagaatcta---ccaaatccttc |
113 |
Q |
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||||||||||||||| || |||||||| ||| ||||||||| ||| ||||| ||| ||||||||||||| |||||||||| ||||| | ||| |
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| T |
29758086 |
acaaaatacacttcgcttgttcatgtggaccacaatcatttggacattcagtgtcatttttgcagttattataaattaagaatctatggccaaaactttc |
29757987 |
T |
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| Q |
114 |
aattgcaaaaagtaaatatataagtaggatgataacatacaaaagttttagaattgtaaccatattttttctca |
187 |
Q |
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||| |||||||| |||| |||| ||| ||||||||||||| || || ||||||||| |||| ||||||||| |
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| T |
29757986 |
tattacaaaaagtgaataaataaatagcatgataacatacacaaacttgagaattgtagccatgctttttctca |
29757913 |
T |
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