View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21451_low_1 (Length: 561)
Name: NF21451_low_1
Description: NF21451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21451_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 161 - 544
Target Start/End: Original strand, 52593472 - 52593855
Alignment:
| Q |
161 |
ccagagcaagcagaggtgcaatagagaattatgaatccagtttgaagaaggaaggagagacaaatggcaactccaacaacagagagtatatgtttttaat |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52593472 |
ccagagcaagcagaggtgcaatagagaattatgaatccagtttgaagaaggaaggagagacaaatggcaactccaacaacagagagtatatgtttttaat |
52593571 |
T |
|
| Q |
261 |
ttcaaacaaaaagaaagaccgaccaccttatcattggaagaacggtaccaaccaattaaataatattaactcctttacttgcttaacaccaactactact |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52593572 |
ttcaaacaaaaagaaagaccgaccaccttatcattggaagaacggtaccaaccaattaaataatattaactcctttacttgcttaacaccaactactact |
52593671 |
T |
|
| Q |
361 |
gctagttatttattggtaaaaaggaataaataattggtaaatttaagcgccaatcattattaagtttatcacgtgtgggaaagcgtgtgtgtgggttgtg |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52593672 |
gctagttatttattggtaaaaaggaataaataattggtaaatttaagcgccaatcattattaagtttatcacgtgtgggaaagcgtgtgtgtgggttgtg |
52593771 |
T |
|
| Q |
461 |
ttgcttgcttgaaattaagggttcaaaggctaaccaccagttggtggacctgtgacttgtaacccttcttaaacaccaacttta |
544 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52593772 |
ttgcttgcttgaaattaagggttcaaaggctaaccaccagttggtggacctgtgacttgtaacccttcttaaacaccaacttta |
52593855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 52593319 - 52593420
Alignment:
| Q |
1 |
cacgcacaaataatatactactaccccatcataatcctttcatgatcacagacttttttaaaaaggacaaaataaagagagacatactactgcctcatga |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52593319 |
cacgcacaaacaatatactactaccccatcataatcatttcatgatcacagacttttttaaaaaggacaaaataaagagagacatactactgcctcatga |
52593418 |
T |
|
| Q |
101 |
tt |
102 |
Q |
| |
|
|| |
|
|
| T |
52593419 |
tt |
52593420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University