View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21451_low_10 (Length: 295)
Name: NF21451_low_10
Description: NF21451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21451_low_10 |
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| [»] scaffold1995 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 38546788 - 38547053
Alignment:
| Q |
11 |
caaagggaggttggagaaacatttaggggttaagattttgagggttcataataagcatgatatggtgccaaagtcaccagggtttcttattaatgagaag |
110 |
Q |
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| T |
38546788 |
caaagggaggttggagaaacatttaggggttaagattttgagggttcataataagcatgatatggtgccaaagtcaccagggtttcttattaatgagaag |
38546887 |
T |
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| Q |
111 |
tcaccggcgtggttattaaagtttgctgaagatattgatattccatggtgttatactcatgttggagttgaattagaattggaccacaagatatctccat |
210 |
Q |
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| T |
38546888 |
tcaccggcgtggttattaaagtttgctgaagatattgatattccatggtgttatactcatgttggagttgaattagaattggaccacaagatatctccat |
38546987 |
T |
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| Q |
211 |
ttttgaatcctaatgctgatgctgcatgtgctcataacttggaagcccacttgcacatactcgatg |
276 |
Q |
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| T |
38546988 |
ttttgaatcctaatgctgatgctgcatgtgctcataacttggaagcccacttgcacatactcgatg |
38547053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 276
Target Start/End: Original strand, 38553239 - 38553503
Alignment:
| Q |
12 |
aaagggaggttggagaaacatttaggggttaagattttgagggttcataataagcatgatatggtgccaaagtcaccagggtttcttattaatgagaagt |
111 |
Q |
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| T |
38553239 |
aaagggagattggagaaacatttaggggttaagattttgagggttcataataagcatgatatggtgccaaagtcaccagggtttcttattaatgagaagt |
38553338 |
T |
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| Q |
112 |
caccggcgtggttattaaagtttgctgaagatattgatattccatggtgttatactcatgttggagttgaattagaattggaccacaagatatctccatt |
211 |
Q |
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| T |
38553339 |
caccggcgtggttattaaagtttgctgaagatattgatattccatggtgttatactcatgttggagttgaattagaattggaccacaagatatctccatt |
38553438 |
T |
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| Q |
212 |
tttgaatcctaatgctgatgctgcatgtgctcataacttggaagcccacttgcacatactcgatg |
276 |
Q |
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| T |
38553439 |
tttgaatcctaatgctgatgctgcatgtgctcataacttggaagcccacttgcacatactcgatg |
38553503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1995 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: scaffold1995
Description:
Target: scaffold1995; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 276
Target Start/End: Original strand, 902 - 1166
Alignment:
| Q |
12 |
aaagggaggttggagaaacatttaggggttaagattttgagggttcataataagcatgatatggtgccaaagtcaccagggtttcttattaatgagaagt |
111 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
902 |
aaagggagattggagaaacatttaggggttaagattttgagggttcataataagcatgatatggtgccaaagtcaccagggtttcttattaatgagaagt |
1001 |
T |
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| Q |
112 |
caccggcgtggttattaaagtttgctgaagatattgatattccatggtgttatactcatgttggagttgaattagaattggaccacaagatatctccatt |
211 |
Q |
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| T |
1002 |
caccggcgtggttattaaagtttgctgaagatattgatattccatggtgttatactcatgttggagttgaattagaattggaccacaagatatctccatt |
1101 |
T |
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| Q |
212 |
tttgaatcctaatgctgatgctgcatgtgctcataacttggaagcccacttgcacatactcgatg |
276 |
Q |
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| T |
1102 |
tttgaatcctaatgctgatgctgcatgtgctcataacttggaagcccacttgcacatactcgatg |
1166 |
T |
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