View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21451_low_11 (Length: 293)
Name: NF21451_low_11
Description: NF21451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21451_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 283
Target Start/End: Original strand, 6819654 - 6819925
Alignment:
| Q |
12 |
atgaatatatagatgtttagacaaatgaaatgaacatatataagtttagtcaatgacactaaccaaagtattcactggatatggtagaatgaagaatagt |
111 |
Q |
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| T |
6819654 |
atgaatatatagatgtttagacaaatgaaatgaacatatagaagtttagtcaatgacactaaccaaagtattcactggatatggtagaatgaagaatagt |
6819753 |
T |
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| Q |
112 |
gtctccattgtttttgattgaaagtgagtcatcatctttgttctgctggcgaccatgaagacaaaagaatgcctctcttttgccatatacagctgccaag |
211 |
Q |
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| T |
6819754 |
gtctccattgtttttgattgaaagtgagtcatcatctttgttctgttggtgaccatgaagacaaaagaaagcatctctttttccatgaacagctgccaag |
6819853 |
T |
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| Q |
212 |
aaaagaggagtttcgccttcgaaatttcgataggaaatgaggataggatctcttttagctatgttgttgcaa |
283 |
Q |
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| T |
6819854 |
aaaagaggagtttcgccttcgaaatttcgatacgaaatgaggataggacatcttttagctatgttgttgcaa |
6819925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 283
Target Start/End: Original strand, 6813098 - 6813369
Alignment:
| Q |
12 |
atgaatatatagatgtttagacaaatgaaatgaacatatataagtttagtcaatgacactaaccaaagtattcactggatatggtagaatgaagaatagt |
111 |
Q |
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| T |
6813098 |
atgaatatatagatgtttagacaaatgaaatgaacatatataagtttagtcaatgacactaaccaaagtattcactggatatggtagaatgaagaatagt |
6813197 |
T |
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| Q |
112 |
gtctccattgtttttgattgaaagtgagtcatcatctttgttctgctggcgaccatgaagacaaaagaatgcctctcttttgccatatacagctgccaag |
211 |
Q |
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| T |
6813198 |
gtccccattattttttcttgaaactgaataatcatctttgtcctgatgacgactatgaagacaaaagaatgcctctcttttgccatatacagctgccaag |
6813297 |
T |
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| Q |
212 |
aaaagaggagtttcgccttcgaaatttcgataggaaatgaggataggatctcttttagctatgttgttgcaa |
283 |
Q |
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| T |
6813298 |
aaaagaggagtttcgccttcgaaatttcgacaggaaatgaggataggatctcttttagctatgttgttgcaa |
6813369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 62 - 283
Target Start/End: Original strand, 6834180 - 6834401
Alignment:
| Q |
62 |
caatgacactaaccaaagtattcactggatatggtagaatgaagaatagtgtctccattgtttttgattgaaagtgagtcatcatctttgttctgctggc |
161 |
Q |
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| T |
6834180 |
caatgacactaaccaaagtattcactggatatggtagaatgaagaatagtgtctccattgtttttgattgaaagtgagtcatcatctttgttctgttcgt |
6834279 |
T |
|
| Q |
162 |
gaccatgaagacaaaagaatgcctctcttttgccatatacagctgccaagaaaagaggagtttcgccttcgaaatttcgataggaaatgaggataggatc |
261 |
Q |
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| T |
6834280 |
gaccatgaagacaaaagaaagcatctctttttccatgaacagctgccaagaaaagaggagtctcgccttcaaaatttcgatatgaaatgaggatgggatc |
6834379 |
T |
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| Q |
262 |
tcttttagctatgttgttgcaa |
283 |
Q |
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|||| | ||||| ||||||||| |
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| T |
6834380 |
tcttctggctatattgttgcaa |
6834401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 34778826 - 34778905
Alignment:
| Q |
99 |
aatgaagaatagtgtctccattgtttttg--attgaaagtgagtcatcatctttgttctgctggcgaccatgaagacaaa |
176 |
Q |
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| T |
34778826 |
aatgaagaatggtgtctccattgttttttttattgaaagtgaatcatcatctttattctgttggtgaccatgaagacaaa |
34778905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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