View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21451_low_12 (Length: 251)
Name: NF21451_low_12
Description: NF21451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21451_low_12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 110 - 251
Target Start/End: Original strand, 9883160 - 9883301
Alignment:
| Q |
110 |
tattttctcctcaatggagttggggggattttattggtcacaacattacataaaatcatttattatcaaagtaaccatcaagaaaaaatataaaacccta |
209 |
Q |
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| T |
9883160 |
tattttctcctcaatggagttggggggattttattggtcacaacattacataaaatcatttattatcaaagtaaccatcaagacaaaatacaaatcccta |
9883259 |
T |
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| Q |
210 |
gatttaatcatatctaaattacaggtcttccaacaagagtac |
251 |
Q |
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| T |
9883260 |
gatttaatcatatctaaattacaggtcttacaacaagagtac |
9883301 |
T |
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Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 9883039 - 9883137
Alignment:
| Q |
16 |
taaataacactttgagatttgattcatagtagaaggatacaattatgatattgtataaattgttttcattcaaggatctcaacaggtggttgaatattt |
114 |
Q |
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| T |
9883039 |
taaagaacactttgagatttgattcatagtagaaggatacaattatgatattgtataaattgttttcattcaaggattccaacaggtggttgaatattt |
9883137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 23668868 - 23668946
Alignment:
| Q |
21 |
aacactttgagatttgattcatagtagaaggatacaattatgatattgtataaattgttttcattcaaggatctcaaca |
99 |
Q |
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| T |
23668868 |
aacactttgtgatttgattctttgtagaggaatacatttatgataatgtatgagttgttttcattcaaggatttcaaca |
23668946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 24894162 - 24894242
Alignment:
| Q |
158 |
cataaaatcatttattatcaaagtaaccatcaagaaaaaatataaaaccctagatttaatcatatctaaattacaggtctt |
238 |
Q |
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| T |
24894162 |
cataaattcatttaataataaagtaaatatcaagacaaaacacaaagccctagatttagtcatatctaaattacgggtctt |
24894242 |
T |
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