View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21451_low_13 (Length: 244)
Name: NF21451_low_13
Description: NF21451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21451_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 6813370 - 6813596
Alignment:
| Q |
1 |
atttctacattcccaagctctgctgcaacatgaagaggagtatttccctttgagttttgcattcgtaggatgtcccaacacatgtctttgctgattttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6813370 |
atttctacattcccaagctctgctgcaacatgaagaggagtatttccctttgagttttgcattcgtaggatgtcccaacacatgtctttgctgattttat |
6813469 |
T |
|
| Q |
101 |
ctaacaaggttgtcacaaagagtgtttgcttcagatacacagcaatgtgtaacaatgtgtcttctacttttgtgatcttggcctccaatactttagggnn |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6813470 |
ctaacaaggttgtcacaaagagtgtttgcttcagatacacagcaatgtgtaacaatgtgtcttctacttttgtgatcttggcctccaatactttagggtt |
6813569 |
T |
|
| Q |
201 |
nnnnncatatgactctataacttctct |
227 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
6813570 |
tttttcatatgactctataacttctct |
6813596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 6834402 - 6834628
Alignment:
| Q |
1 |
atttctacattcccaagctctgctgcaacatgaagaggagtatttccctttgagttttgcattcgtaggatgtcccaacacatgtctttgctgattttat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||| ||| || |||| |
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| T |
6834402 |
atttctacattcccaagctctgctgcaacatgaagaggagtatttccctttgagttttgcattcttaggatgttccggcacatatcttggcttatgttat |
6834501 |
T |
|
| Q |
101 |
ctaacaaggttgtcacaaagagtgtttgcttcagatacacagcaatgtgtaacaatgtgtcttctacttttgtgatcttggcctccaatactttagggnn |
200 |
Q |
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||||||||||||||||||| | |||||| ||| || | ||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |||| |
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| T |
6834502 |
ctaacaaggttgtcacaaaaattgtttggctcacgtatatggcaatgtgtaacaccgtgtcttctgcttttgtgatctttgcctccaatacttcagggtt |
6834601 |
T |
|
| Q |
201 |
nnnnncatatgactctataacttctct |
227 |
Q |
| |
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|||||||||||| ||||||||| |
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| T |
6834602 |
ttgctcatatgactctaaaacttctct |
6834628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 6819929 - 6820152
Alignment:
| Q |
4 |
tctacattcccaagctctgctgcaacatgaagaggagtatttccctttgagttttgcattcgtaggatgtcccaacacatgtctttgctgattttatcta |
103 |
Q |
| |
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|||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||| ||| |||||||| | |||| ||||| || || ||||||| |
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| T |
6819929 |
tctacattcccaagctctgcagcaacatgaaggggggtatttcccttcgagttttgcgttcttaggatgttcatgcacacgtcttggcatatgttatcta |
6820028 |
T |
|
| Q |
104 |
acaaggttgtcacaaagagtgtttgcttcagatacacagcaatgtgtaacaatgtgtcttctacttttgtgatcttggcctccaatactttagggnnnnn |
203 |
Q |
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|||||| |||||||||| |||||| ||| |||||||||||||||||||| |||||||||| ||| ||||||||| ||||||||||||| |||| |
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| T |
6820029 |
acaaggctgtcacaaagcatgtttggctcacatacacagcaatgtgtaacactgtgtcttctgcttctgtgatctttgcctccaatacttcaggggtttt |
6820128 |
T |
|
| Q |
204 |
nncatatgactctataacttctct |
227 |
Q |
| |
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|||||||||||| ||||||||| |
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|
| T |
6820129 |
ctcatatgactctaaaacttctct |
6820152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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