View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21451_low_16 (Length: 211)
Name: NF21451_low_16
Description: NF21451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21451_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 43562941 - 43562765
Alignment:
| Q |
18 |
atttcatgctggttcaagagctatttgtggtggtccaatttatttgagtgatagtgttggctctcatgactttgatttgattaagaaacttgtgttacct |
117 |
Q |
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| T |
43562941 |
atttcatgctggttcaagagctatttgtggtggtccaatttatttgagtgatagtgttggctctcatgactttgatttgattaagaaacttgtgttacct |
43562842 |
T |
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| Q |
118 |
gatggtacaatccccaaatgcatacattttcctcttcctactagagattgtcttttcaaaaattctctatttgacaa |
194 |
Q |
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| T |
43562841 |
gatggtacaatccccaaatgcatacattttcctcttcctactagagattgtcttttcaaaaattctctatttgacaa |
43562765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 44956113 - 44956289
Alignment:
| Q |
18 |
atttcatgctggttcaagagctatttgtggtggtccaatttatttgagtgatagtgttggctctcatgactttgatttgattaagaaacttgtgttacct |
117 |
Q |
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| T |
44956113 |
atttcatgctggctcaagagctatttgtggtggtccaatttatttgagtgatgatgttggctttcatgactttgatctgattaagaaactcgtgttccct |
44956212 |
T |
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| Q |
118 |
gatggtacaatccccaaatgcatacattttcctcttcctactagagattgtcttttcaaaaattctctatttgacaa |
194 |
Q |
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| T |
44956213 |
gatggtacaattccaaaatgcatacattttcctcttcctactacagactgtcttttcaaatatcctctatttgacaa |
44956289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 26171698 - 26171804
Alignment:
| Q |
18 |
atttcatgctggttcaagagctatttgtggtggtccaatttatttgagtgatagtgttggctctcatgactttgatttgattaagaaacttgtgttacct |
117 |
Q |
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| T |
26171698 |
atttcatgcaggttcaagagctatctgtggtggtccagtttatttgaatgataatgttggctctcatgcctttgatctgattaagaagcttgttttccct |
26171797 |
T |
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| Q |
118 |
gatggta |
124 |
Q |
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||||||| |
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| T |
26171798 |
gatggta |
26171804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 43976057 - 43976227
Alignment:
| Q |
21 |
tcatgctggttcaagagctatttgtggtggtccaatttatttgagtgatagtgttggctctcatgactttgatttgattaagaaacttgtgttacctgat |
120 |
Q |
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| T |
43976057 |
tcatgcaggttcaagagctatttgtggtggtccaatttatttgagtgataatgttggctctcatgactttgatttgattaagaagcttgtgttccctgat |
43976156 |
T |
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| Q |
121 |
ggtacaatccccaaatgcatacattttcctcttcctactagagattgtcttttcaaaaattctctatttga |
191 |
Q |
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| T |
43976157 |
ggtacaatccccagatgcacacattttgctcttccaactagagattgtcttttcaaaaaccctctatttga |
43976227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 36430789 - 36430615
Alignment:
| Q |
18 |
atttcatgctggttcaagagctatttgtggtggtccaatttatttgagtgatagtgttggctctcatgactttgatttgattaagaaacttgtgttacct |
117 |
Q |
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||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| || ||| |
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| T |
36430789 |
atttcatgcaggttcaagagctatctgtggtggtccagtttatttgagtgataatgttggctctcatgactttgatctgattaagaagcttgttttccct |
36430690 |
T |
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| Q |
118 |
gatggtacaatccccaaatgcatacattttcctcttcctactagagattgtcttttcaaaaattctctatttgac |
192 |
Q |
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||||||||||| || || |||||||||||||| ||||| || |||||||| |||||||| || ||||||||||| |
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| T |
36430689 |
gatggtacaattcctaagtgcatacattttccccttccaacaagagattgccttttcaagaaccctctatttgac |
36430615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 16225014 - 16224928
Alignment:
| Q |
18 |
atttcatgctggttcaagagctatttgtggtggtccaatttatttgagtgatagtgttggctctcatgactttgatttgattaagaa |
104 |
Q |
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||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| |||| || |||||||||| |
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| T |
16225014 |
atttcatgcaggttcaagagctatctgtggtggtccagtttatttgagtgataatgttggctctcatgcctttaatctgattaagaa |
16224928 |
T |
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