View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21451_low_8 (Length: 327)

Name: NF21451_low_8
Description: NF21451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21451_low_8
NF21451_low_8
[»] chr1 (5 HSPs)
chr1 (1-320)||(9883336-9883655)
chr1 (125-318)||(9260708-9260894)
chr1 (238-316)||(31917020-31917098)
chr1 (226-315)||(9851177-9851266)
chr1 (183-318)||(31921159-31921293)
[»] chr4 (8 HSPs)
chr4 (224-318)||(19100061-19100155)
chr4 (199-318)||(22321809-22321928)
chr4 (222-287)||(19314599-19314664)
chr4 (183-315)||(20942051-20942183)
chr4 (242-304)||(19328194-19328256)
chr4 (242-318)||(10717157-10717233)
chr4 (242-318)||(10930927-10931003)
chr4 (261-313)||(20871456-20871508)
[»] chr6 (3 HSPs)
chr6 (221-287)||(28912939-28913005)
chr6 (243-312)||(22427100-22427169)
chr6 (242-318)||(31986543-31986619)
[»] scaffold0050 (1 HSPs)
scaffold0050 (184-307)||(33407-33530)
[»] chr2 (1 HSPs)
chr2 (238-308)||(33851550-33851620)
[»] scaffold0512 (1 HSPs)
scaffold0512 (254-318)||(10750-10814)
[»] chr3 (1 HSPs)
chr3 (238-314)||(21304480-21304556)
[»] chr5 (1 HSPs)
chr5 (242-316)||(26332580-26332654)
[»] scaffold0032 (1 HSPs)
scaffold0032 (183-287)||(91723-91827)


Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 9883336 - 9883655
Alignment:
Q  1 ctttgaaagataattatttttcaacttgagcttttataaagaattcacaaataccattaacacactttgcaaatggaggaggcaacggcaccggacaatc 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||    
T  9883336 ctttgaaacataattatttttcaacttgagcttttataaagaattcacaaataccatcaacacactttgcaaatggaggaggcaatggcactggacaatc 9883435  T
Q  101 atcatcagaaacgcatggaaaggtagctatatagacaaataagaaaaatggatattactcaaatgtgaacaaaaaatattgttataagatatatttgaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9883436 atcatcagaaacgcatggaaaggtagctatatagacaaataagaaaaatggatattactcaaatgtgaacaaaaaatattgttataagatatatttgaaa 9883535  T
Q  201 attagaaaatgatgtgaaaaatgacatacttgtactcgttacaacaagaaattgagatagaaagatgataaaagcataaacaaacatacgaatttgagac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  9883536 attagaaaatgatgtgaaaaatgacatacttgtactcgttacaacaagaaattgagatagaaagatgattaaagcataaacaaacacacgaatttgagac 9883635  T
Q  301 atatttttcctcctttgctt 320  Q
    ||||||||||||||||||||    
T  9883636 atatttttcctcctttgctt 9883655  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 125 - 318
Target Start/End: Original strand, 9260708 - 9260894
Alignment:
Q  125 agctatatagacaaataagaaaaatggatat--tactcaaatgtgaacaaaaaatattgttataagatatatttgaaaattagaaaatgatgtgaaaaat 222  Q
    ||||| |||||||| ||||||||||| ||||  ||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||||| ||||||||||    
T  9260708 agctacatagacaattaagaaaaatgaatatactactcaaatgtgaacaaaaaataatgttataagatagatttgcaaaatagaaaatggtgtgaaaaat 9260807  T
Q  223 gacatacttgtactcgttacaacaagaaattgagatagaaagatgataaaagcataaacaaacatacgaatttgagacatatttttcctcctttgc 318  Q
    ||||||| ||         ||||||| |||||||||||||||||| | |||||||||| ||| | | || |||||| |||||||| ||||||||||    
T  9260808 gacatacctg---------caacaagcaattgagatagaaagatggttaaagcataaaaaaatacaagattttgagccatattttacctcctttgc 9260894  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 316
Target Start/End: Complemental strand, 31917098 - 31917020
Alignment:
Q  238 gttacaacaagaaattgagatagaaagatgataaaagcataaacaaacatacgaatttgagacatatttttcctccttt 316  Q
    ||||||||||||||| |||| | ||||||||| |||||||||||||| ||  ||||||||  |||||||||||||||||    
T  31917098 gttacaacaagaaatagagaaataaagatgatcaaagcataaacaaatatgagaatttgaatcatatttttcctccttt 31917020  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 315
Target Start/End: Complemental strand, 9851266 - 9851177
Alignment:
Q  226 atacttgtactcgttacaacaagaaattgagatagaaagatgataaaagcataaacaaacatacgaatttgagacatatttttcctcctt 315  Q
    |||||| |||| | ||||||||||  | ||||||||| |||||| |||||||||| ||| ||  | ||||||| ||||||||||||||||    
T  9851266 atacttttacttgatacaacaagacgtagagatagaacgatgatcaaagcataaataaatatgagtatttgagccatatttttcctcctt 9851177  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 318
Target Start/End: Complemental strand, 31921293 - 31921159
Alignment:
Q  183 tataagatatatttgaaaattagaaaatgatgtgaaaaatgacatacttgtactcgttacaacaagaaattgagatagaaagatgataaaagcataaaca 282  Q
    ||||||||| ||| ||||| | ||||||| ||| |||| ||| ||||||  ||  ||||||||||||||| |||| | || |||||  |||||||||| |    
T  31921293 tataagataaattagaaaaattgaaaatggtgttaaaa-tgatatactttcacaagttacaacaagaaatagagaaacaacgatgaataaagcataaata 31921195  T
Q  283 aacatacgaatttgagacatatttttcctcctttgc 318  Q
    || ||  || |||||| ||||||| |||||||||||    
T  31921194 aatatgagagtttgagtcatatttgtcctcctttgc 31921159  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 318
Target Start/End: Complemental strand, 19100155 - 19100061
Alignment:
Q  224 acatacttgtactcgttacaacaagaaattgagatagaaagatgataaaagcataaacaaacatacgaatttgagacatatttttcctcctttgc 318  Q
    |||||||| |||| |||| ||||||||||||||| ||||| ||||| |||||||||||||| ||   ||||| || ||||||||| |||||||||    
T  19100155 acatacttctacttgttataacaagaaattgagaaagaaaaatgatcaaagcataaacaaagatgaaaattttagccatattttttctcctttgc 19100061  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 318
Target Start/End: Complemental strand, 22321928 - 22321809
Alignment:
Q  199 aaattagaaaatgatgtgaaaaatgacatacttgtactcgttacaacaagaaattgagatagaaagatgataaaagcataaacaaacatacgaatttgag 298  Q
    ||||||||||||| | |||||||||||||||    | | |||||||||||||||  ||| | | ||||||| ||| ||||| ||||||   |||||||||    
T  22321928 aaattagaaaatggtatgaaaaatgacataccaccattggttacaacaagaaataaagaaatagagatgatgaaaacataagcaaacaagagaatttgag 22321829  T
Q  299 acatatttttcctcctttgc 318  Q
     ||||||||| |||||||||    
T  22321828 ccatattttttctcctttgc 22321809  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 19314664 - 19314599
Alignment:
Q  222 tgacatacttgtactcgttacaacaagaaattgagatagaaagatgataaaagcataaacaaacat 287  Q
    ||||||||||||| |  ||||||||| ||||||||| ||||||||||| | |||||||| ||||||    
T  19314664 tgacatacttgtattgattacaacaaaaaattgagagagaaagatgatcagagcataaataaacat 19314599  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 315
Target Start/End: Complemental strand, 20942183 - 20942051
Alignment:
Q  183 tataagatatatttgaaaattagaaaatgatgtgaaaaatgacatacttgtactcgttacaacaagaaattgagatagaaagatgataaaagcataaaca 282  Q
    ||||||||| ||| |||| ||  |||||| |||||||||| ||||||   |||| |||| |||||||||| |  | | | ||||||| |||||| |||||    
T  20942183 tataagataaattagaaattttaaaaatggtgtgaaaaattacataccgctactagttataacaagaaataggaaaatatagatgatcaaagcagaaaca 20942084  T
Q  283 aacatacgaatttgagacatatttttcctcctt 315  Q
    |||||  ||||||||  | ||||||||||||||    
T  20942083 aacatgagaatttgaaccgtatttttcctcctt 20942051  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 19328256 - 19328194
Alignment:
Q  242 caacaagaaattgagatagaaagatgataaaagcataaacaaacatacgaatttgagacatat 304  Q
    ||||||||||| | || ||||||||||| |||||||||| |||||||  |||||||| |||||    
T  19328256 caacaagaaatggggaaagaaagatgatcaaagcataaaaaaacataataatttgagccatat 19328194  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 10717157 - 10717233
Alignment:
Q  242 caacaagaaattgagatagaaagatgataaaagcataaacaaacatacgaatttgagacatatttttcctcctttgc 318  Q
    ||||||||||| |||| | || |||||  |||||||||||| | | | ||||||||| ||||||||||||| |||||    
T  10717157 caacaagaaatggagaaaaaaggatgagcaaagcataaacataaaaaagaatttgagccatatttttcctcatttgc 10717233  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 10930927 - 10931003
Alignment:
Q  242 caacaagaaattgagatagaaagatgataaaagcataaacaaacatacgaatttgagacatatttttcctcctttgc 318  Q
    ||||||||||| |||| | || |||||  |||||||||||| | | | ||||||||| ||||||||||||| |||||    
T  10930927 caacaagaaatggagaaaaaaggatgagcaaagcataaacataaaaaagaatttgagccatatttttcctcatttgc 10931003  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 313
Target Start/End: Complemental strand, 20871508 - 20871456
Alignment:
Q  261 aaagatgataaaagcataaacaaacatacgaatttgagacatatttttcctcc 313  Q
    ||||||||| |||||||||||||||||  |||||| || ||| ||||||||||    
T  20871508 aaagatgatcaaagcataaacaaacatgagaattttagccatgtttttcctcc 20871456  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 28913005 - 28912939
Alignment:
Q  221 atgacatacttgtactcgttacaacaagaaattgagatagaaagatgataaaagcataaacaaacat 287  Q
    ||||| ||||| |||| ||||||| |||||||||||| ||||||||||| ||| |||||||||||||    
T  28913005 atgacttacttctactggttacaataagaaattgagaaagaaagatgatcaaaacataaacaaacat 28912939  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 22427169 - 22427100
Alignment:
Q  243 aacaagaaattgagatagaaagatgataaaagcataaacaaacatacgaatttgagacatatttttcctc 312  Q
    ||||| |||| |||||||||||||||| |||||||||| ||||||  ||  ||||  |||||||||||||    
T  22427169 aacaacaaatagagatagaaagatgatgaaagcataaagaaacatgagatattgaaccatatttttcctc 22427100  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 31986543 - 31986619
Alignment:
Q  242 caacaagaaattgagatagaaagatgataaaagcataaacaaacatacgaatttgagacatatttttcctcctttgc 318  Q
    |||||||||||  ||| |||| |||||| ||| |||||||||||||  ||  ||||  |||||||||||||||||||    
T  31986543 caacaagaaatatagaaagaaggatgatcaaaacataaacaaacatgagatattgaaccatatttttcctcctttgc 31986619  T

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Target: scaffold0050 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 307
Target Start/End: Complemental strand, 33530 - 33407
Alignment:
Q  184 ataagatatatttgaaaattagaaaatgatgtgaaaaatgacatacttgtactcgttacaacaagaaattgagatagaaagatgataaaagcataaacaa 283  Q
    |||| ||| ||| ||||||| ||||||| ||| |||||| |||||| | || | ||| ||||| ||||| |||| ||||||||||| ||| ||||| |||    
T  33530 ataatataaattagaaaatttgaaaatgttgttaaaaataacatacgtatatttgtttcaacatgaaatagagaaagaaagatgatcaaaacataagcaa 33431  T
Q  284 acatacgaatttgagacatatttt 307  Q
    ||||   |||||||||||| ||||    
T  33430 acatgaaaatttgagacatgtttt 33407  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 33851620 - 33851550
Alignment:
Q  238 gttacaacaagaaattgagatagaaagatgataaaagcataaacaaacatacgaatttgagacatattttt 308  Q
    ||||||||||||||| |||| ||||||||||| ||| ||||||  |||||  ||||||||| |||||||||    
T  33851620 gttacaacaagaaatagagaaagaaagatgatcaaaacataaatgaacatgagaatttgagccatattttt 33851550  T

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Target: scaffold0512 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 10750 - 10814
Alignment:
Q  254 gagatagaaagatgataaaagcataaacaaacatacgaatttgagacatatttttcctcctttgc 318  Q
    |||| |||||||| || |||||||||||||||||  |||| |||| |||||||||| ||||||||    
T  10750 gagaaagaaagataatcaaagcataaacaaacatgagaatgtgagccatatttttcttcctttgc 10814  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 314
Target Start/End: Original strand, 21304480 - 21304556
Alignment:
Q  238 gttacaacaagaaattgagatagaaagatgataaaagcataaacaaacatacgaatttgagacatatttttcctcct 314  Q
    |||||||||| ||||  |||||||| ||| ||||||||||||| |||  || ||||||||| |||||||||| ||||    
T  21304480 gttacaacaaaaaataaagatagaaggattataaaagcataaataaatttaagaatttgagccatatttttcgtcct 21304556  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 316
Target Start/End: Complemental strand, 26332654 - 26332580
Alignment:
Q  242 caacaagaaattgagatagaaagatgataaaagcataaacaaacatacgaatttgagacatatttttcctccttt 316  Q
    ||||||||||| |||| |||||| |||| |||||||||||||||||   || || || |||||||||||| ||||    
T  26332654 caacaagaaatagagaaagaaagttgatcaaagcataaacaaacatggaaaatttagccatatttttccttcttt 26332580  T

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Target: scaffold0032 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 287
Target Start/End: Complemental strand, 91827 - 91723
Alignment:
Q  183 tataagatatatttgaaaattagaaaatgatgtgaaaaatgacatacttgtactcgttacaacaagaaattgagatagaaagatgataaaagcataaaca 282  Q
    ||||||||| | | ||||||  ||||||| ||||||||| ||||||||| |  | ||| |||| | |||| |||| ||||||||||| ||||||  ||||    
T  91827 tataagataaactagaaaatatgaaaatggtgtgaaaaaagacatactttttttggtttcaaccaaaaatagagaaagaaagatgatcaaagcaccaaca 91728  T
Q  283 aacat 287  Q
    |||||    
T  91727 aacat 91723  T

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