View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21451_low_9 (Length: 299)
Name: NF21451_low_9
Description: NF21451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21451_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 15853392 - 15853632
Alignment:
| Q |
16 |
aattatttcctgcatatcctttatgttagaacagcaaacccaattctaaagtgaacagataaataaacgcacaagaatacaatgattgactacggagttc |
115 |
Q |
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| T |
15853392 |
aattatttcctgcatatcctttatgttagaacagcaaacccaattctaaagtgaacagataaataaacgcacatgaatacaatgattgattacggagttc |
15853491 |
T |
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| Q |
116 |
agccaattgtgcctacatccctgaaaccagagta-------taattttttattatgcaatctctttattaaaaactctctttatcctacaagacaagcgt |
208 |
Q |
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| T |
15853492 |
ggccaattgtgcctacatccctgaaaccagagtagtggttgtaattttttattatgcaatctcttcattaaaaactctcgttatccgacaagacaagcgt |
15853591 |
T |
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| Q |
209 |
ttagttttaaaaaactcttgtgatacgacaagcgtgtagtt |
249 |
Q |
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| T |
15853592 |
ttagttttaaaaaactcttgtgatacgacaagcgtgtagtt |
15853632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 15860754 - 15860869
Alignment:
| Q |
16 |
aattatttcctgcatatcctttatgttagaacagcaaacccaattctaaagtgaacagataaataaacgcacaagaatacaatgattgactacggagttc |
115 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| || ||| | |||||||||| |||| ||| ||||| |
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| T |
15860754 |
aattctttcctgcatatcctttatgttagaacaacaaacccaactctaaagcaaacagataaattaaagcataggaatacaatgcttgattacaaagttc |
15860853 |
T |
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| Q |
116 |
agccaattgtgcctac |
131 |
Q |
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| T |
15860854 |
taccaattgtgtctac |
15860869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 15853656 - 15853700
Alignment:
| Q |
250 |
gtctgatcatttctcattactataaaatctacatttcttctctct |
294 |
Q |
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| T |
15853656 |
gtctgatcatttctcattactataaaatctacatttcttctctct |
15853700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 15867145 - 15867205
Alignment:
| Q |
21 |
tttcctgcatatcctttatgttagaacagcaaacccaattctaaagtgaacagataaataaa |
82 |
Q |
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| T |
15867145 |
tttcctgcatatcctttatgttagaaccgcaaacccaactctaaa-taaacagataaataaa |
15867205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 115
Target Start/End: Complemental strand, 37202087 - 37202021
Alignment:
| Q |
49 |
gcaaacccaattctaaagtgaacagataaataaacgcacaagaatacaatgattgactacggagttc |
115 |
Q |
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| T |
37202087 |
gcaaacccgactctaaagtaatcaaataaataaacgcacaagaacacaaagattgattacagagttc |
37202021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 15521925 - 15521970
Alignment:
| Q |
57 |
aattctaaagtgaacagataaataaacgcacaagaatacaatgatt |
102 |
Q |
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| T |
15521925 |
aattctaaagttgatagataaataaacgcacaagaacacaatgatt |
15521970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 4012077 - 4012122
Alignment:
| Q |
42 |
tagaacagcaaacccaattctaaagtgaacagataaataaacgcac |
87 |
Q |
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| T |
4012077 |
tagaacagcaaacccgactctaaagtagacagataaataaacgcac |
4012122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 4489133 - 4489185
Alignment:
| Q |
37 |
tatgttagaacagcaaacccaattctaaagtgaacagataaataaacgcacaa |
89 |
Q |
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||||||||| ||||||||| ||||||||| |||| |||||||||||||||| |
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| T |
4489133 |
tatgttagaccagcaaacctggttctaaagtaaacatataaataaacgcacaa |
4489185 |
T |
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