View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21452_high_5 (Length: 250)
Name: NF21452_high_5
Description: NF21452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21452_high_5 |
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| [»] scaffold0373 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 4 - 217
Target Start/End: Complemental strand, 21513504 - 21513291
Alignment:
| Q |
4 |
tgtgccaaaggcaatggaggaaaagaactaacactatgaaaatctttgaatgggcataagaaaaatcttcgagcatggtacacaagaattgatcggcatt |
103 |
Q |
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| T |
21513504 |
tgtgccaaaggcaatggaggaaaagaactaacactatgaaaatctctgaatgggcataagaaaaatcttcgagcatggtacacaagaattgattggcatt |
21513405 |
T |
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| Q |
104 |
tcatcaatcgaggattcgggtagagcaagatttgagctaccacgaactatgcttggagttatcaaaatttgtatcaaggaggagtgttgaaaaatgctac |
203 |
Q |
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| T |
21513404 |
tcatcaatcgaggattcgggtagagcaagatttgagctaccacgaactatgcttggagttatcaaaatttgtatcaaggaggagtgttgaaaaatgctac |
21513305 |
T |
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| Q |
204 |
aaatttctagtaga |
217 |
Q |
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|||||||||||||| |
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| T |
21513304 |
aaatttctagtaga |
21513291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 6825034 - 6825092
Alignment:
| Q |
133 |
atttgagctaccacgaactatgcttggagttatcaaaatttgtatcaaggaggagtgtt |
191 |
Q |
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| T |
6825034 |
atttgagctactacgaactatgcttggagttactgaaatatgcatcaaggaggagtgtt |
6825092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 26947691 - 26947504
Alignment:
| Q |
4 |
tgtgccaaaggcaatggaggaaaagaactaacactatgaaaatctttgaatgggcataagaaaaatcttcgagcatggtacacaagaattgatcggcatt |
103 |
Q |
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| T |
26947691 |
tgtgccaaaggcaatggaggaaaagatccaagactaagaaaatctttgaatgggcataataaacatcctcgagcatggtacacaagaattgatcaacatt |
26947592 |
T |
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| Q |
104 |
tcatcaatcgaggattcgggtagagcaagatttgagctaccacgaactatgcttggagttatcaaaatttgtatcaaggaggagtgtt |
191 |
Q |
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| T |
26947591 |
ttatcaatcgaggatttggctagatcaagatttgagctactacgaattatgcttggagttaccgaaatatgcatcaaggaggagtgtt |
26947504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 15239 - 15181
Alignment:
| Q |
133 |
atttgagctaccacgaactatgcttggagttatcaaaatttgtatcaaggaggagtgtt |
191 |
Q |
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| T |
15239 |
atttgagctactacgaactatgcttggagttactgaaatatgcatcaaggaggagtgtt |
15181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 8989466 - 8989498
Alignment:
| Q |
181 |
ggaggagtgttgaaaaatgctacaaatttctag |
213 |
Q |
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| T |
8989466 |
ggaggagtgttgaaatatgctacaaatttctag |
8989498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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