View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21452_high_6 (Length: 237)
Name: NF21452_high_6
Description: NF21452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21452_high_6 |
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| [»] scaffold0504 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 18189406 - 18189626
Alignment:
| Q |
1 |
aatttctcgcagagacatctgataaaaaagaagatgatgttcttactttgctggaaactctaaagcgttctggtgttaatttacctcgtccaagttggtg |
100 |
Q |
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| T |
18189406 |
aatttctcgcagagacatctgataaaaaagaagatgatggtcttactttgctggaaactctaaagcgttctggtgttaatttacctcgtccaagttggtg |
18189505 |
T |
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| Q |
101 |
gcctgaggatatgaaatctcaactcttcaacttcgatgataaggaggagaggaaatgaaactctgtcctgatcggnnnnnnngtttgtttgagggtattg |
200 |
Q |
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| T |
18189506 |
gccggaggatatgaaatctcaactcttcaacttcgatgataaggaggagaggaaatgaaactctgtcctggtcggtttttttgtttgtttgagggtattg |
18189605 |
T |
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| Q |
201 |
acggttctttcatggaggatt |
221 |
Q |
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| T |
18189606 |
acggttctttcatggaggatt |
18189626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0504 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 164
Target Start/End: Original strand, 7958 - 8093
Alignment:
| Q |
29 |
agaagatgatgttcttactttgctggaaactctaaagcgttctggtgttaatttacctcgtccaagttggtggcctgaggatatgaaatctcaactcttc |
128 |
Q |
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| T |
7958 |
agaagatgatggtcttactttgttggaatctcttaagcgtgccggtattaaatttcctcgtccaagttggtggtcggacgatatgaaatctgaactcttc |
8057 |
T |
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| Q |
129 |
aacttcgatgataaggaggagaggaaatgaaactct |
164 |
Q |
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| T |
8058 |
aactttgatgatgaagagcagaggaagtgaagctct |
8093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 54631867 - 54631974
Alignment:
| Q |
27 |
aaagaagatgatgttcttactttgctggaaactctaaagcgttctggtgttaatttacctcgtccaagttggtggcctgaggatatgaaatctcaactct |
126 |
Q |
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||||||||||||| |||||||||| |||||||| |||||||| ||||| |||| || |||||||| || |||||||| || |||||||||||| |||||| |
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| T |
54631867 |
aaagaagatgatggtcttactttgttggaaactttaaagcgtgctggtattaaatttcctcgtccgagctggtggcccgacgatatgaaatctgaactct |
54631966 |
T |
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| Q |
127 |
tcaacttc |
134 |
Q |
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| T |
54631967 |
tcaacttc |
54631974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 39487232 - 39487120
Alignment:
| Q |
28 |
aagaagatgatgttcttactttgctggaaactctaaagcgttctggtgttaatttacctcgtccaagttggtggcctgaggatatgaaatctcaactctt |
127 |
Q |
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||||||||| |||||||||| || | |||||| |||||| ||||| ||| ||| ||||||||||| |||||||| || ||||||||||| || |||| |
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| T |
39487232 |
aagaagatggtgttcttactgtggtcgaaactgggaagcgtgctggtattacttttcctcgtccaagctggtggccggacgatatgaaatccgaaatctt |
39487133 |
T |
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| Q |
128 |
caacttcgatgat |
140 |
Q |
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||| || |||||| |
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| T |
39487132 |
caattttgatgat |
39487120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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