View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21452_low_1 (Length: 417)
Name: NF21452_low_1
Description: NF21452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21452_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Complemental strand, 40573244 - 40572857
Alignment:
| Q |
18 |
tgatctaggagtatatttgaagatttcacatctctatgtatgattggtgtcgaagcagcagagtgtaagtatgccaggacaccggctgtttcttttgaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40573244 |
tgatctaggagtatatttgaagatttcacatctctatgtatgattggtgtcgaagcagcagagtgtaagtatgccaggacaccggctatttcttttgaaa |
40573145 |
T |
|
| Q |
118 |
ttcttaaccttgttttccatgtaagctttatagtttggttttggtcatgaagatgttcataaactgtaccattgggaataaattcatacacaactaaggg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40573144 |
ttcttaaccttgttttccatgtaagctttatagattgggtttcgtcatgaagatgctcataaacagtaccattgggaataaattcatacacaactaaggg |
40573045 |
T |
|
| Q |
218 |
aacttctgtctctaaacaacagcccaagatctttaccacatttctatggttgatttgggaaagtacgaccacttcattgatgaacgactcaacctggttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40573044 |
aacttctgtctctaaacaacagcccaagatctttaccacatttctatggttgatttgggaaagtacgaccacttcattgatgaacgactcaacctggttc |
40572945 |
T |
|
| Q |
318 |
gggtcacttattttggacttttttattgctacaattctgttatcttgtaaaactcctttgtaaacaattccctgaccaccttggccta |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40572944 |
gggtcacttattttggacttttttattgctacaattctgttattttgtaaaactcctttgtaaacaattccttgaccaccttggccta |
40572857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 405
Target Start/End: Complemental strand, 40579701 - 40579314
Alignment:
| Q |
18 |
tgatctaggagtatatttgaagatttcacatctctatgtatgattggtgtcgaagcagcagagtgtaagtatgccaggacaccggctgtttcttttgaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| || | ||| |||| | |
|
|
| T |
40579701 |
tgatctaggagtatatttgaagatttcacatctctatgtatgattggtgtagaagcagcagagtgtaaatatgccagcacaccagcagcttcctttgcta |
40579602 |
T |
|
| Q |
118 |
ttcttaaccttgttttccatgtaagctttatagtttggttttggtcatgaagatgttcataaactgtaccattgggaataaattcatacacaactaaggg |
217 |
Q |
| |
|
||||||| |||||||||||||||||||| |||| |||| ||| ||||||||||| |||||||| |||||||||||||||||||| || |||| ||| || |
|
|
| T |
40579601 |
ttcttaatcttgttttccatgtaagcttcatagattgggtttcatcatgaagatgctcataaacagtaccattgggaataaattcgtaaacaagtaacgg |
40579502 |
T |
|
| Q |
218 |
aacttctgtctctaaacaacagcccaagatctttaccacatttctatggttgatttgggaaagtacgaccacttcattgatgaacgactcaacctggttc |
317 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||| ||||||| |
|
|
| T |
40579501 |
aacttctgtctctaaacaacaacccaaaatctttaccacatttctatgattgatttgggaaagaatgaccacttcattgatgaacgactcaatctggttc |
40579402 |
T |
|
| Q |
318 |
gggtcacttattttggacttttttattgctacaattctgttatcttgtaaaactcctttgtaaacaattccctgaccaccttggccta |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40579401 |
gggtcacttattttggacttttttattgctacaattctgttatcttgtaaaactcctttgtaaacaattccctgaccaccttggccta |
40579314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 405
Target Start/End: Complemental strand, 40568643 - 40568256
Alignment:
| Q |
18 |
tgatctaggagtatatttgaagatttcacatctctatgtatgattggtgtcgaagcagcagagtgtaagtatgccaggacaccggctgtttcttttgaaa |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || || |||||||||| | |
|
|
| T |
40568643 |
tgatctaggagtatatttgtagatttcacatctctatgtatgattggtgttgaagccgcagagtgtaagtatgccaggactccagcagtttcttttgcta |
40568544 |
T |
|
| Q |
118 |
ttcttaaccttgttttccatgtaagctttatagtttggttttggtcatgaagatgttcataaactgtaccattgggaataaattcatacacaactaaggg |
217 |
Q |
| |
|
||||||| || |||||||||||||| ||||||||||||||||| ||||||||||| || ||||| || || |||| ||| |||||||| |||| ||||| |
|
|
| T |
40568543 |
ttcttaatctggttttccatgtaagttttatagtttggttttgatcatgaagatgctcgtaaacagtgccgttggaaatgaattcataaacaagcaaggg |
40568444 |
T |
|
| Q |
218 |
aacttctgtctctaaacaacagcccaagatctttaccacatttctatggttgatttgggaaagtacgaccacttcattgatgaacgactcaacctggttc |
317 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||| |
|
|
| T |
40568443 |
aacttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgggaaagaacgaccacttcattgatgaacggctcaatctggttt |
40568344 |
T |
|
| Q |
318 |
gggtcacttattttggacttttttattgctacaattctgttatcttgtaaaactcctttgtaaacaattccctgaccaccttggccta |
405 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40568343 |
gggtcactgactttggacttttttattgctacaattcttttattttgtaaaactcctttgtaaacagttccctgaccaccttggccta |
40568256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 27 - 405
Target Start/End: Complemental strand, 40598022 - 40597644
Alignment:
| Q |
27 |
agtatatttgaagatttcacatctctatgtatgattggtgtcgaagcagcagagtgtaagtatgccaggacaccggctgtttcttttgaaattcttaacc |
126 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || || |||||||||| ||||| || | |
|
|
| T |
40598022 |
agtatatttgtagatttgacatctctatgtatgattggtgtggaagcagcagaatgtaagtatgccaggactccagcagtttcttttgctattctcaatc |
40597923 |
T |
|
| Q |
127 |
ttgttttccatgtaagctttatagtttggttttggtcatgaagatgttcataaactgtaccattgggaataaattcatacacaactaagggaacttctgt |
226 |
Q |
| |
|
|||||||||||||||||||| ||| || |||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| || ||||||||||| |
|
|
| T |
40597922 |
ttgttttccatgtaagctttctagattcgttttggtcatgaatatgctcataaactgtaccattgggaataaattcataaacaagcaatggaacttctgt |
40597823 |
T |
|
| Q |
227 |
ctctaaacaacagcccaagatctttaccacatttctatggttgatttgggaaagtacgaccacttcattgatgaacgactcaacctggttcgggtcactt |
326 |
Q |
| |
|
||||||||||| || | | ||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
40597822 |
ttctaaacaacaacctacaagttttaccacattcctatggttgatttgggaaagcacggccacttcattgatgaacgactcaatctggtttgggtcactg |
40597723 |
T |
|
| Q |
327 |
attttggacttttttattgctacaattctgttatcttgtaaaactcctttgtaaacaattccctgaccaccttggccta |
405 |
Q |
| |
|
||||| ||||| |||||||||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40597722 |
atttttgacttctttattgctacaatacttttatcttctaaaactcctttgtaaactgttccctgaccaccttggccta |
40597644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 24 - 405
Target Start/End: Complemental strand, 40591543 - 40591162
Alignment:
| Q |
24 |
aggagtatatttgaagatttcacatctctatgtatgattggtgtcgaagcagcagagtgtaagtatgccaggacaccggctgtttcttttgaaattctta |
123 |
Q |
| |
|
||||| || |||| |||||| | ||||||||| |||||||| || ||||||||||| ||||||||||||||||| || || |||||||||| ||||||| |
|
|
| T |
40591543 |
aggaggatgtttgtagattttatatctctatgaatgattggagtagaagcagcagaatgtaagtatgccaggactccagcagtttcttttgctattctta |
40591444 |
T |
|
| Q |
124 |
accttgttttccatgtaagctttatagtttggttttggtcatgaagatgttcataaactgtaccattgggaataaattcatacacaactaagggaacttc |
223 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||| ||||||||||| || ||||| || ||||||||||| |||||||| |||| || |||||||| |
|
|
| T |
40591443 |
accttgttttccatgtcagctttatagattggttttgatcatgaagatgatcgtaaacagttccattgggaatgaattcataaacaagcaatggaacttc |
40591344 |
T |
|
| Q |
224 |
tgtctctaaacaacagcccaagatctttaccacatttctatggttgatttgggaaagtacgaccacttcattgatgaacgactcaacctggttcgggtca |
323 |
Q |
| |
|
||||||||||||||| ||||| || ||||||||||||||||||||||||| ||||| |||||||||||||||||||| | ||||| |||||| ||||| |
|
|
| T |
40591343 |
tgtctctaaacaacaacccaaaattcttaccacatttctatggttgatttgagaaagaacgaccacttcattgatgaatggctcaatctggttttggtca |
40591244 |
T |
|
| Q |
324 |
cttattttggacttttttattgctacaattctgttatcttgtaaaactcctttgtaaacaattccctgaccaccttggccta |
405 |
Q |
| |
|
| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
40591243 |
ttgattttggacttttttattgctacaatacttttatcttgtaaaactcctttgtaaactgttccctgagaacctttgccta |
40591162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 405
Target Start/End: Complemental strand, 40602197 - 40601812
Alignment:
| Q |
20 |
atctaggagtatatttgaagatttcacatctctatgtatgattggtgtcgaagcagcagagtgtaagtatgccaggacaccggctgtttcttttgaaatt |
119 |
Q |
| |
|
||||||||| || |||| |||||| | ||||||||| |||||||| || ||||||||||| ||||||||||||| ||| || || |||||| ||| ||| |
|
|
| T |
40602197 |
atctaggaggatgtttgtagattttatatctctatgaatgattggagtagaagcagcagaatgtaagtatgccaagactccagcagtttctgttgctatt |
40602098 |
T |
|
| Q |
120 |
cttaaccttgttttccatgtaagctttatagtttggttttggtcatgaagatgttcataaactgtaccattgggaataaattcatacacaactaagggaa |
219 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||| |||||| ||||| |||| || |||| |
|
|
| T |
40602097 |
cttaatcttgtgttccatgtaagctttatagactggttttgatcatgaagatgatcataaacagtaccattggaaataaactcataaacaagcaatggaa |
40601998 |
T |
|
| Q |
220 |
cttctgtctctaaacaacagcccaagatctttaccacatttctatggttgatttgggaaagtacgaccacttcattgatgaacgactcaacctggttcgg |
319 |
Q |
| |
|
||||||| |||||||| || ||||| | || |||||||||||||||||||||||| ||||| | || ||||||||||||||||| ||||| |||||| | |
|
|
| T |
40601997 |
cttctgtttctaaacagcaacccaaaagctgtaccacatttctatggttgatttgagaaagaatgatcacttcattgatgaacggctcaatctggttttg |
40601898 |
T |
|
| Q |
320 |
gtcacttattttggacttttttattgctacaattctgttatcttgtaaaactcctttgtaaacaattccctgaccaccttggccta |
405 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40601897 |
gtcactgattgtggacttttttattgcgacaattctgttatcttgtaaaactcctttgtaaactgttccctgaccaccttggccta |
40601812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 40588147 - 40588102
Alignment:
| Q |
27 |
agtatatttgaagatttcacatctctatgtatgattggtgtcgaag |
72 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
40588147 |
agtacatttgaagttttcacatctctatgtatgattggtgttgaag |
40588102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 19 - 405
Target Start/End: Original strand, 2015094 - 2015480
Alignment:
| Q |
19 |
gatctaggagtatatttgaagatttcacatctctatgtatgattggtgtcgaagcagcagagtgtaagtatgccaggacaccggctgtttcttttgaaat |
118 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| || |||||||| ||||| || || |||||||||| || |
|
|
| T |
2015094 |
gatctaggagtatgtttgaagatttcacatctctatgtatgattggtgtagatgcagcagaatgcaagtatgctaggactccagcagtttcttttgctat |
2015193 |
T |
|
| Q |
119 |
tcttaaccttgttttccatgtaagctttatagtttggttttggtcatgaagatgttcataaactgtaccattgggaataaattcatacacaactaaggga |
218 |
Q |
| |
|
||| || |||||||||||||||||||||| |||| | ||||| ||||||||||| |||||||| |||||||||||||| ||||| || |||| ||| ||| |
|
|
| T |
2015194 |
tctcaatcttgttttccatgtaagctttaaagttggattttgatcatgaagatgctcataaacagtaccattgggaatgaattcgtaaacaagtaaagga |
2015293 |
T |
|
| Q |
219 |
acttctgtctctaaacaacagcccaagatctttaccacatttctatggttgatttgggaaagtacgaccacttcattgatgaacgactcaacctggttcg |
318 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| || | ||||||||||||||||| ||||| |||||| | |
|
|
| T |
2015294 |
acttctgtctctaaacaacaacccaagagctttaccacatttctatggttgatttgtgaaagcacaatcacttcattgatgaacggctcaatctggttag |
2015393 |
T |
|
| Q |
319 |
ggtcacttattttggacttttttattgctacaattctgttatcttgtaaaactcctttgtaaacaattccctgaccaccttggccta |
405 |
Q |
| |
|
||||||| ||||||||||| || || ||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
2015394 |
ggtcactgattttggacttcttaatagctacaattcttttatcttgtaaaactcctttgtaaactgttccctgacctccttggccta |
2015480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 184 - 280
Target Start/End: Complemental strand, 11845189 - 11845093
Alignment:
| Q |
184 |
taccattgggaataaattcatacacaactaagggaacttctgtctctaaacaacagcccaagatctttaccacatttctatggttgatttgggaaag |
280 |
Q |
| |
|
||||||| ||||| |||||||| |||| || |||| ||||||||| |||||||| || || ||||| ||||||||||||| ||||||||| ||||| |
|
|
| T |
11845189 |
taccattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctattgttgatttgtgaaag |
11845093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 280
Target Start/End: Complemental strand, 11849917 - 11849822
Alignment:
| Q |
185 |
accattgggaataaattcatacacaactaagggaacttctgtctctaaacaacagcccaagatctttaccacatttctatggttgatttgggaaag |
280 |
Q |
| |
|
|||||| ||||| |||||||| |||| || |||| ||||||||| |||||||| || || ||||| ||||||||||||| ||||||||| ||||| |
|
|
| T |
11849917 |
accattaggaatgaattcataaacaagcaatggaatttctgtctccaaacaacatcctaatatcttgaccacatttctattgttgatttgtgaaag |
11849822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 126 - 296
Target Start/End: Original strand, 14153418 - 14153584
Alignment:
| Q |
126 |
cttgttttccatgtaagctttatagtttggttttggtcatgaagatgttcataaactgtaccattgggaataaattcatacacaactaagggaacttctg |
225 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||| ||||||||||| | |||||| ||||||| | ||||||||| || || ||||||||||||| |
|
|
| T |
14153418 |
cttgttttccatgtaagctttaaagattggttttgatcatgaagatgataataaacaataccatt-gcaataaattcgtaaac----aagggaacttctg |
14153512 |
T |
|
| Q |
226 |
tctc-taaacaacagcccaagatctttaccacatttctatggttgatttgggaaagtacgaccacttcattg |
296 |
Q |
| |
|
|||| |||| |||| ||||| | |||||||||||| ||||||||||||||||||| |||||||||| |||| |
|
|
| T |
14153513 |
tctcttaaaaaacaacccaaaagatttaccacatttatatggttgatttgggaaagaacgaccactttattg |
14153584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 14022906 - 14023002
Alignment:
| Q |
106 |
tttcttttgaaattcttaaccttgttttccatgtaagctttatagtttggttttggtcatgaagatgttcataaactgtaccattgggaataaattc |
202 |
Q |
| |
|
||||||||| ||||| || |||||||||||||||||| ||| || ||||||||| ||||||||||| |||||||| |||||||||| ||||||||| |
|
|
| T |
14022906 |
tttcttttgctattctcaatcttgttttccatgtaagcgttaaagattggttttgatcatgaagatgctcataaacagtaccattggaaataaattc |
14023002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 13765546 - 13765800
Alignment:
| Q |
18 |
tgatctaggagtatatttgaagatttcacatctctatgtatgattggtgtcgaagcagcagagtgtaagtatgccaggacaccggctgtttcttttgaaa |
117 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| |||||||||||||||| ||||||| | | |||| | |||||| || | |||| || | |
|
|
| T |
13765546 |
tgatctaggagtatatttgtagagttcacatctatatgtatgattggtgtagaagcagtataacacaagttcgtcaggactccatcaacttctatttcta |
13765645 |
T |
|
| Q |
118 |
ttcttaaccttgttttccatgtaagctttatagtttggttttggtcatgaagatgttcataaactgtaccattgggaataaattcatacacaactaaggg |
217 |
Q |
| |
|
|||| || |||||||||||||||||| ||| || |||| |||| |||| || ||| ||||||| || | || ||||||||||| || | || |||||| |
|
|
| T |
13765646 |
ttctcaatcttgttttccatgtaagcattaaagattggctttgatcattaatatgcgcataaacaatatcgttaggaataaattcgtaaagaagtaaggg |
13765745 |
T |
|
| Q |
218 |
aacttctgtctctaaacaacagcccaagatctttaccacatttctatggttgattt |
273 |
Q |
| |
|
||||||||||||||||||||| | ||| | |||||||||||| || ||||||||| |
|
|
| T |
13765746 |
aacttctgtctctaaacaacaactcaaaaaatttaccacattt-tacggttgattt |
13765800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 301
Target Start/End: Complemental strand, 14155227 - 14155044
Alignment:
| Q |
105 |
gtttcttttgaaattcttaaccttgttttccatgtaagctttatagtttggttttggtcatgaagatgttcataaactgtaccattgggaataaattcat |
204 |
Q |
| |
|
|||||||||| ||||| | ||||| ||||| |||||||||| || ||||||||| ||||||||||| ||| |||| ||||||||| |||||||||| | |
|
|
| T |
14155227 |
gtttcttttgccattctcattcttgtattccaagtaagctttaaagattggttttgatcatgaagatgctcaaaaacagtaccattgagaataaattcgt |
14155128 |
T |
|
| Q |
205 |
acacaactaagggaacttctgtctctaaacaacagcccaagatctttaccacatttctatggttgatttgggaaagtacgaccacttcattgatgaa |
301 |
Q |
| |
|
| ||| | ||||||||| ||||| |||| | |||||||||||||||||| |||||||||||||| || |||| |||||||||||| |
|
|
| T |
14155127 |
a------------aacatgtgtctctaagcaaca-accaaaagctttaccacatttctatgattgatttgggaaagaacaaccatttcattgatgaa |
14155044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 382
Target Start/End: Original strand, 9229739 - 9229938
Alignment:
| Q |
183 |
gtaccattgggaataaattcatacacaactaagggaacttctgtctctaaacaacagcccaagatctttaccacatttctatggttgatttgggaaagta |
282 |
Q |
| |
|
||||||||| |||||||||||| || | ||| ||||||| |||||| |||||||| ||||||| || || ||||||||||| || |||||||| | | |
|
|
| T |
9229739 |
gtaccattgctaataaattcataaactagtaaaggaacttgtgtctccaaacaacatcccaagagtttgacaacatttctatgatttatttgggacaaaa |
9229838 |
T |
|
| Q |
283 |
cgaccacttcattgatgaacgactcaacctggttcgggtcacttattttggacttttttattgctacaattctgttatcttgtaaaactcctttgtaaac |
382 |
Q |
| |
|
| ||||| ||||| ||||| ||| || ||| | | || ||||||||||||| || ||||| ||||| ||||| ||| || || |||||||||||| |
|
|
| T |
9229839 |
caaccacctcatttatgaattgctctacttgggtggcatccattattttggacttcttgattgcaacaatcctgttgtctgctagaattcctttgtaaac |
9229938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 382
Target Start/End: Original strand, 9200371 - 9200537
Alignment:
| Q |
216 |
ggaacttctgtctctaaacaacagcccaagatctttaccacatttctatggttgatttgggaaagtacgaccacttcattgatgaacgactcaacctggt |
315 |
Q |
| |
|
|||||||||||||||| ||||||||| | || || || ||||| ||||| || ||||||| || || || || ||||| ||||| ||||| || | |
|
|
| T |
9200371 |
ggaacttctgtctctagacaacagcctaggagtttgacaacattcctatgatttatttgggtcagaacaactacctcattaatgaattgctcaatttgat |
9200470 |
T |
|
| Q |
316 |
tcgggtcacttattttggacttttttattgctacaattctgttatcttgtaaaactcctttgtaaac |
382 |
Q |
| |
|
| | |||| |||||||||| ||||||| || |||||| ||||||| ||||||||||||||||||| |
|
|
| T |
9200471 |
ttgcgtcaattattttggatttttttacagcgacaattttgttatcaggtaaaactcctttgtaaac |
9200537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 9161978 - 9162039
Alignment:
| Q |
216 |
ggaacttctgtctctaaacaacagcccaagatctttaccacatttctatggttgatttggga |
277 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || || ||||||||||| || |||||||| |
|
|
| T |
9161978 |
ggaacttctgtctctaaacaacatcccaagagtttgacaacatttctatgatttatttggga |
9162039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 301
Target Start/End: Complemental strand, 1868516 - 1868401
Alignment:
| Q |
186 |
ccattgggaataaattcatacacaactaagggaacttctgtctctaaacaacagcccaagatctttaccacatttctatggttgatttgggaaagtacga |
285 |
Q |
| |
|
||||||| || ||||||||| || | || ||||||||||||||||||||||| ||||||| || || ||||| ||||| || ||||| || || || | |
|
|
| T |
1868516 |
ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaagagtttgacaacattcctatgatttatttgagagagaacaa |
1868417 |
T |
|
| Q |
286 |
ccacttcattgatgaa |
301 |
Q |
| |
|
|||| ||||| ||||| |
|
|
| T |
1868416 |
ccacctcattaatgaa |
1868401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 9156066 - 9156127
Alignment:
| Q |
216 |
ggaacttctgtctctaaacaacagcccaagatctttaccacatttctatggttgatttggga |
277 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || || |||||||| || || |||||||| |
|
|
| T |
9156066 |
ggaacttctgtctctaaacaacatcccaagagtttgacaacatttctgtgatttatttggga |
9156127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 1842907 - 1842847
Alignment:
| Q |
186 |
ccattgggaataaattcatacacaactaagggaacttctgtctctaaacaacagcccaaga |
246 |
Q |
| |
|
||||||| || ||||||||| || | || ||||||||||||||||||||||| ||||||| |
|
|
| T |
1842907 |
ccattggtaacaaattcataaaccaacaaaggaacttctgtctctaaacaacaccccaaga |
1842847 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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